Gene detail

Detail information of GWHGAAZE005534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611532.1	0	PREDICTED: WD repeat-containing protein 44-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|P49178\|GBB_MAIZE	1E-11	Guanine nucleotide-binding protein subunit beta
trEMBL	tr\|A0A022QH63\|A0A022QH63_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU26583.1}
TAIR10	AT2G37670.1	3E-170	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9583533	9590275	+
GWHAAZE00000002	mRNA	9583533	9590275	+
GWHAAZE00000002	exon	9583533	9583920	+
GWHAAZE00000002	exon	9584216	9585057	+
GWHAAZE00000002	exon	9585337	9585427	+
GWHAAZE00000002	exon	9585516	9585673	+
GWHAAZE00000002	exon	9585845	9585896	+
GWHAAZE00000002	exon	9586031	9586110	+
GWHAAZE00000002	exon	9586208	9586301	+
GWHAAZE00000002	exon	9586389	9587161	+
GWHAAZE00000002	exon	9590126	9590275	+
GWHAAZE00000002	CDS	9583533	9583920	+
GWHAAZE00000002	CDS	9584216	9585057	+
GWHAAZE00000002	CDS	9585337	9585427	+
GWHAAZE00000002	CDS	9585516	9585673	+
GWHAAZE00000002	CDS	9585845	9585896	+
GWHAAZE00000002	CDS	9586031	9586110	+
GWHAAZE00000002	CDS	9586208	9586301	+
GWHAAZE00000002	CDS	9586389	9587161	+
GWHAAZE00000002	CDS	9590126	9590275	+

Transcript Sequence
>GWHTAAZE005542 ATGAAGAGGACAGTAACTATGAACTGGGAGTCCCTAGGGGACGACGATGATGACGATTTCTACGACTCCAATGACAGAATCTCGTCTGCTAGCGCTCAGGATGCGGACTACGAGTCCGATGACTCCGATGATGAAGAATTTGATGATAGCCGCGCATCTTTTTCAAATAACAATGAATTCTGTACCTTTAAGTCCGCTAATAATCCTCCTTCCATGTTTAATGACTTCAACACATGGATGGCCGACCCTGGGGATATTAAAGACCGTCGCAAAAAGCTCCTCCAAGGTATGGGCTTGGGGAGCAACAAGAGCTTTATGAAACTCGCTAGCGCAAAGATCAATAGAATTGTTTCTAAGAAAGTTGAGATTAAGCCATCCGATTCTCCTGGTAAAAGCAAATTTGGAGATGTATTGCCAACTGACGAGCTAGGGACCTTCTTCTTGATAAAGAATTTGGACACTGGAAAGGAATTCATTGTTAAAGAGTCTAACCGAGGGGGAATGTGGAAACAGCTCAGCGATGTTGAGACCGGGAAGCAACTTTCTATAGAGGAATTTGAGAAGTCAGTTGGTCATTCGCCTGTGGTTAAAGAATTAATTTGTAGAAACGCATCTTCGAGTAACGAAGAAACAAGGAAAGCCATAATAAACGCGAATAACTACCTTAGCAAAAGCTTCAGATATAGTATGAGACAAGGGGCTAATTTATTGAAGAACATAAAGGGTGTGGCAAGCGGAATTATTGGTGACAAAGATATGAATGTTTCACCATCTGCTCAACAGTCAGGCAAGAATGAGTCGTCCCAATGGGTTAAAATTCGTCACCAAGGGAAGTCCTTTAAAGAATTAACCGGTTTGCATATGTGTCAAGAGATTCAGGCTCATGAAGGATCGATTTGGACAATTAAATTCAGCTTGGACGCTCGTTACCTTGCGAGTGCAGGGGAAGACAAGGTAATCCACATTTGGGAAGTGCAAGAATGCGATGTTATGATGATGAAACCATCTGATGATTCGAATAATTCTTCGGTGGGGACCCCGCCTGTTCACCCAATGCCTGCTGCCGGTAATTCAGACCGCCCTCCACTAGCCGACATGACGCCTACGGCATCTGAAAAGAAGAAAAAGGGGAAGAACTCAAACAGAAAAAAGAGCAGTGGTATTCCAGACTATGTCCGTGTGCCAGAAACTGTTTTGGACTTTCGGAAAAACCAATTTGTACTTTCAAAGTTACTACTATCATCTTCAATGGACAAGACTGTTAGGCTGTGGAACATGGAAAGTCAGGACTGTTTGAAAATGTTTGCTCACAGTGATTATGTGACTTGTGTACAGTTCAATCCCGTAAATGATGATTACTTCATTAGTGGTTCACTGGATGCAAAGGTTCGAATTTGGAACATATCTGCTCGGAAAGTTGTGGATTGGACTGATCTTAACGAAATGGTTACTGCTACTTGTTTTACTCCCGATGGCCAGGGTGCATTAGTTGGTTCTCATAAAGGGAATTGCCGCTTGTATAGTACAACCGATTGTAAACTAGAACAAAAGGAGATATTTGAAATCCGGAACAAGAAAAAGTCCCCAGCAAAAAAGATTACAGGTTTCCAGTTTGCCCCATCGAGTTCATCTGAAGTTCTCCTTAGTTGTGCTGACTCCCGGATTAGAATTATGCAAGGATCAAACGCCATACAAAAATTCGCCGGTCTCCGAAATATTAACAGCCAAATAGCGGCCTCATTTACTCCAAATGGAAAATATGTCATAAGTGCAAGCGAAGATTCTCATGTGTACATGTGGAAACGTGATGAGCCAAGAAATGCGGGAGTCGGGAAACCCAAAACCGCTACCACCTCTACTCATGCTCACGAGCAGTTCTTGTGTAAAGAAGTTTCAGTTGCTATCCCATGGCCTGGCAGTATAAAAAATATACCACCAATTGTAGAGGTTAATAAAAGGCACTCAAAGAAACCAGTGCCACAAGGGGTTTACGCAAGTGGTTCTCCAACAAGAGAAGAAGTTGCTAAAAATAGCAAGAAAGATTTGCCGCCTCTTCCCAAAAAGAACACCAATTCGGAGAAATCTTCAAGTTCCCCAGATGAGGACTCGTCTCAGGTTTCTCATACTGAGTCAGATATCGGTAGCGAGTCATTTGCTTCAGATGCTTCTTCAGTTAAATCTGTTGACTCTCCTTCAGTTAAATCAGGTGAGCCGCCTTCAACTAATCCTGATGATCCTACTTCAACTAAGTCTGGTGAGCCTCCTACAACCAAGTCTGGAGAGACTCCTACAACTAAGTCTGGTGAGTCTCCTTCAATTAGTACTTCTGCAAATTCTGGATCTCAGTTGTGGTCTTGGTTTGATGTTGGTGGCCATGGAGGCCAGACTATTGAAGCAACAGCATGGGGCTTGGTTATTGTAACAGCAGGGTTGGGAGGTGAGATTAGGGCTTATCAAAATTTTGGGTTACCACTTAAGGGCAAAATCGATTTGAGAAGAGATCGAGTTGCCGTGGGTGGATGGCGGGGGCGCTATAGCGGTGGTGCTGTAGCGGACTGGTTGCTGAGTGGAGTAGGTGAGGTGGCCGTGGGTGGATGCCTGTATGGAGGTTGCGGCGTGGCACCGTAG

Network for GWHGAAZE005534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	292	323	0.00062
PF00400.33	WD40	410	425	0.25
PF00400.33	WD40	430	467	0.0006
PF00400.33	WD40	577	601	0.035

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.629
	SRR3591706	second leaf	0.658
	SRR3591707	mature leaf	0.956
	SRR3591708	Shoot apex	0.806
	SRR3591709	Stem	1.269
	SRR3591710	White floral bud	23.594
	SRR3591711	White flower	3.188
	SRR3591712	Green floral bud	37.570
	SRR3591713	Yellow flower	1.655
SRP173429	SRR8316895	Juvenile bud stage	1.011
	SRR8316896	Juvenile bud stage	4.713
	SRR8316897	Juvenile bud stage	4.053
	SRR8316894	Third green stage	4.386
	SRR8316900	Third green stage	34.668
	SRR8316901	Third green stage	30.664
	SRR8316898	Complete white stage	5.885
	SRR8316899	Complete white stage	4.933
	SRR8316903	Complete white stage	9.847
	SRR8316902	Silver flowering stage	0.871
	SRR8316904	Silver flowering stage	2.496
	SRR8316905	Silver flowering stage	0.942
	SRR8316906	Gold flowering stage	1.753
	SRR8316907	Gold flowering stage	1.195
	SRR8316908	Gold flowering stage	1.703
SRP132670	SRR6706286	Control	15.111
	SRR6706287	Light intensity 50%	15.376
	SRR6706288	Light intensity 20%	14.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.879
	CNS0095593	Slightly white alabastrum(diploid) 2	8.658
	CNS0095594	Slightly white alabastrum(diploid) 3	10.799
	CNS0095595	Whole white alabastrum(diploid) 2	30.151
	CNS0095596	Whole white alabastrum(diploid) 3	35.113
	CNS0095597	Whole white alabastrum(diploid) 4	35.191
	CNS0095598	Silvery flower (diploied) 1	1.015
	CNS0095599	Silvery flower (diploied) 2	3.871
	CNS0095600	Silvery flower (diploied) 3	4.140
	CNS0095601	Golden flower (diploid) 1	1.556
	CNS0095602	Golden flower (diploid) 2	2.210
	CNS0095603	Golden flower (diploid) 3	1.973
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	56.416
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.490
	CNS0095610	Silvery flower (tetraploid) 1	2.654
	CNS0095611	Silvery flower (tetraploid) 2	3.176
	CNS0095612	Silvery flower (tetraploid) 3	8.029
	CNS0095613	Golden flower (tetraploid) 1	0.729
	CNS0095614	Golden flower (tetraploid) 2	1.746
	CNS0095615	Golden flower (tetraploid) 3	6.298
CRA001975	CRR073297	Stem 1	4.470
	CRR073298	Stem 2	6.299
	CRR073299	Stem 3	2.676
	CRR073300	Leaf 1	27.712
	CRR073301	Leaf 2	20.272
	CRR073302	Leaf 3	13.206
	CRR073303	Juvenile bud 1	18.649
	CRR073304	Juvenile bud 2	17.809
	CRR073305	Juvenile bud 3	3.086
	CRR073306	Third green 1	8.660
	CRR073307	Third green 2	8.194
	CRR073308	Third green 3	7.622
	CRR073309	Second white 1	1.246
	CRR073310	Second white 2	2.092
	CRR073311	Second white 3	2.168
	CRR073312	Silver flowering 1	8.635
	CRR073313	Silver flowering 2	10.331
	CRR073314	Silver flowering 3	4.757
	CRR073315	Gold flowering 1	6.722
	CRR073316	Gold flowering 2	1.126
	CRR073317	Gold flowering 3	4.360
	CRR073318	Tawny withering 1	7.139
	CRR073319	Tawny withering 2	6.125
	CRR073320	Tawny withering 3	6.639