Detail information of GWHGAAZE005537


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06623.14.24073E-95unnamed protein product [Coffea canephora]
Swissprottr|Q9LZ56|DOF51_ARATH9E-53Dof zinc finger protein DOF5.1
trEMBLtr|A0A068UG68|A0A068UG68_COFCA2E-95Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06623.1}
TAIR10AT5G02460.12E-43Dof-type zinc finger DNA-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene96288159629624-
GWHAAZE00000002mRNA96288159629624-
GWHAAZE00000002exon96288159629624-
GWHAAZE00000002CDS96288159629624-
Transcript Sequence

Network for GWHGAAZE005537

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02701.16zf-Dof24797.20E-32
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-Dof

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.185
SRR3591706second leaf5.494
SRR3591707mature leaf4.985
SRR3591708Shoot apex12.517
SRR3591709Stem5.816
SRR3591710White floral bud3.703
SRR3591711White flower4.295
SRR3591712Green floral bud2.218
SRR3591713Yellow flower1.435
SRP173429 SRR8316895Juvenile bud stage 4.367
SRR8316896Juvenile bud stage 3.859
SRR8316897Juvenile bud stage 0.785
SRR8316894Third green stage 1.284
SRR8316900Third green stage 1.332
SRR8316901Third green stage 1.167
SRR8316898Complete white stage 0.686
SRR8316899Complete white stage 2.111
SRR8316903Complete white stage 1.477
SRR8316902Silver flowering stage2.192
SRR8316904Silver flowering stage1.388
SRR8316905Silver flowering stage0.871
SRR8316906Gold flowering stage 1.254
SRR8316907Gold flowering stage 1.808
SRR8316908Gold flowering stage 2.551
SRP132670SRR6706286Control1.120
SRR6706287Light intensity 50%1.337
SRR6706288Light intensity 20%1.306
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.490
CNS0095593Slightly white alabastrum(diploid) 24.054
CNS0095594Slightly white alabastrum(diploid) 32.593
CNS0095595Whole white alabastrum(diploid) 22.953
CNS0095596Whole white alabastrum(diploid) 31.599
CNS0095597Whole white alabastrum(diploid) 40.397
CNS0095598Silvery flower (diploied) 13.265
CNS0095599Silvery flower (diploied) 22.017
CNS0095600Silvery flower (diploied) 32.097
CNS0095601Golden flower (diploid) 12.233
CNS0095602Golden flower (diploid) 23.852
CNS0095603Golden flower (diploid) 32.626
CNS0095604Slightly white alabastrum(tetraploid) 13.722
CNS0095605Slightly white alabastrum(tetraploid) 23.902
CNS0095606Slightly white alabastrum(tetraploid) 36.892
CNS0095607Whole white alabastrum(tetraploid) 12.019
CNS0095608Whole white alabastrum(tetraploid) 20.511
CNS0095609Whole white alabastrum(tetraploid) 30.938
CNS0095610Silvery flower (tetraploid) 15.554
CNS0095611Silvery flower (tetraploid) 22.842
CNS0095612Silvery flower (tetraploid) 33.633
CNS0095613Golden flower (tetraploid) 12.096
CNS0095614Golden flower (tetraploid) 25.943
CNS0095615Golden flower (tetraploid) 32.669
CRA001975CRR073297Stem 13.280
CRR073298Stem 23.527
CRR073299Stem 36.941
CRR073300Leaf 10.629
CRR073301Leaf 21.567
CRR073302Leaf 32.370
CRR073303Juvenile bud 10.606
CRR073304Juvenile bud 20.574
CRR073305Juvenile bud 30.903
CRR073306Third green 12.366
CRR073307Third green 27.370
CRR073308Third green 35.687
CRR073309Second white 14.696
CRR073310Second white 22.510
CRR073311Second white 31.741
CRR073312Silver flowering 11.831
CRR073313Silver flowering 21.742
CRR073314Silver flowering 31.559
CRR073315Gold flowering 11.640
CRR073316Gold flowering 21.518
CRR073317Gold flowering 31.096
CRR073318Tawny withering 12.888
CRR073319Tawny withering 22.846
CRR073320Tawny withering 35.723