Gene detail

Detail information of GWHGAAZE005543

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010270643.1	2.62437E-41	PREDICTED: calcium-binding protein CML38-like [Nelumbo nucifera]
Swissprot	tr\|Q9SRE6\|CML38_ARATH	1E-24	Calcium-binding protein CML38
trEMBL	tr\|K4C9A1\|K4C9A1_SOLLC	2E-31	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g073830.1.1}
TAIR10	AT1G76650.3	1E-20	calmodulin-like 38

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9706857	9707315	+
GWHAAZE00000002	mRNA	9706857	9707315	+
GWHAAZE00000002	exon	9706857	9707315	+
GWHAAZE00000002	CDS	9706857	9707315	+

Transcript Sequence
>GWHTAAZE005551 ATGGAATTCGAGGACAGAATTTCTTCAACATCATCATCACCATCATCATCAGAAATCACCATCAGCAAACACAATTCACCTCCTCGATCCGCTTTCAGAAGACTCTGTCGGAAATTATCTCGTAAATCTCAAGATAGACGATCCACCGGTTCAGATCCGGCGATTGGAGTCGACGATTTGATCGAGCGAGTTTTCACGTACTTTGACGAAGACGGTGACGGGAAGATATCTGCGGCGGAGTTGGAGAGCTGCGTGAGGACGGTGGGAGGGGAAATTACGCGGGAAGAGGCGCAATTGGCGGTGGAATCGTCGGATTCGGACGGAGACGGGAGGTTAGGGCTTGAGGACTTTGCGAAGCTGATGGAGGCAAGTGGAGAGGAGGAGAAGAATGGGGAGTTGAAGGAGGCGTTTGGAATGTACGCATTGAAGGGAGCGAGTGTATTACGCCTAAGAGTTTGA

Network for GWHGAAZE005543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13499.7	EF-hand_7	61	121	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	190.963
	SRR3591706	second leaf	32.429
	SRR3591707	mature leaf	17.856
	SRR3591708	Shoot apex	131.316
	SRR3591709	Stem	127.490
	SRR3591710	White floral bud	67.355
	SRR3591711	White flower	106.050
	SRR3591712	Green floral bud	24.748
	SRR3591713	Yellow flower	78.020
SRP173429	SRR8316895	Juvenile bud stage	102.560
	SRR8316896	Juvenile bud stage	72.254
	SRR8316897	Juvenile bud stage	86.972
	SRR8316894	Third green stage	36.251
	SRR8316900	Third green stage	41.440
	SRR8316901	Third green stage	73.080
	SRR8316898	Complete white stage	3.199
	SRR8316899	Complete white stage	83.523
	SRR8316903	Complete white stage	5.762
	SRR8316902	Silver flowering stage	13.982
	SRR8316904	Silver flowering stage	7.813
	SRR8316905	Silver flowering stage	22.404
	SRR8316906	Gold flowering stage	103.978
	SRR8316907	Gold flowering stage	59.435
	SRR8316908	Gold flowering stage	40.530
SRP132670	SRR6706286	Control	6.428
	SRR6706287	Light intensity 50%	4.281
	SRR6706288	Light intensity 20%	2.866
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.232
	CNS0095593	Slightly white alabastrum(diploid) 2	66.731
	CNS0095594	Slightly white alabastrum(diploid) 3	54.740
	CNS0095595	Whole white alabastrum(diploid) 2	48.049
	CNS0095596	Whole white alabastrum(diploid) 3	6.919
	CNS0095597	Whole white alabastrum(diploid) 4	36.756
	CNS0095598	Silvery flower (diploied) 1	199.919
	CNS0095599	Silvery flower (diploied) 2	161.213
	CNS0095600	Silvery flower (diploied) 3	64.195
	CNS0095601	Golden flower (diploid) 1	153.238
	CNS0095602	Golden flower (diploid) 2	76.993
	CNS0095603	Golden flower (diploid) 3	74.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.370
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.659
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.727
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.295
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.373
	CNS0095610	Silvery flower (tetraploid) 1	9.648
	CNS0095611	Silvery flower (tetraploid) 2	2.434
	CNS0095612	Silvery flower (tetraploid) 3	18.509
	CNS0095613	Golden flower (tetraploid) 1	6.726
	CNS0095614	Golden flower (tetraploid) 2	4.193
	CNS0095615	Golden flower (tetraploid) 3	11.831
CRA001975	CRR073297	Stem 1	69.613
	CRR073298	Stem 2	101.128
	CRR073299	Stem 3	102.689
	CRR073300	Leaf 1	158.942
	CRR073301	Leaf 2	207.164
	CRR073302	Leaf 3	155.082
	CRR073303	Juvenile bud 1	114.579
	CRR073304	Juvenile bud 2	107.114
	CRR073305	Juvenile bud 3	167.844
	CRR073306	Third green 1	57.517
	CRR073307	Third green 2	43.825
	CRR073308	Third green 3	36.306
	CRR073309	Second white 1	63.008
	CRR073310	Second white 2	44.182
	CRR073311	Second white 3	34.407
	CRR073312	Silver flowering 1	135.381
	CRR073313	Silver flowering 2	131.029
	CRR073314	Silver flowering 3	93.175
	CRR073315	Gold flowering 1	81.304
	CRR073316	Gold flowering 2	59.416
	CRR073317	Gold flowering 3	72.945
	CRR073318	Tawny withering 1	17.103
	CRR073319	Tawny withering 2	55.415
	CRR073320	Tawny withering 3	37.001