Detail information of GWHGAAZE005555


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006339032.10PREDICTED: eukaryotic translation initiation factor 3 subunit A-like isoform X1 [Solanum tuberosum]
Swissprottr|Q40554|EIF3A_TOBAC0Eukaryotic translation initiation factor 3 subunit A {ECO:0000255|HAMAP-Rule:MF_03000}
trEMBLtr|M1ARB3|M1ARB3_SOLTU0Eukaryotic translation initiation factor 3 subunit A {ECO:0000256|HAMAP-Rule:MF_03000, ECO:0000256|SAAS:SAAS00003684}
TAIR10AT4G11420.10eukaryotic translation initiation factor 3A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene99155819921668-
GWHAAZE00000002mRNA99155819921668-
GWHAAZE00000002exon99155819915889-
GWHAAZE00000002exon99160659916145-
GWHAAZE00000002exon99162939916499-
GWHAAZE00000002exon99167049916910-
GWHAAZE00000002exon99178819918042-
GWHAAZE00000002exon99181419918368-
GWHAAZE00000002exon99186629918691-
GWHAAZE00000002exon99187989919166-
GWHAAZE00000002exon99197159919930-
GWHAAZE00000002exon99206339921114-
GWHAAZE00000002exon99215809921668-
GWHAAZE00000002five_prime_UTR99216269921668-
GWHAAZE00000002CDS99215809921625-
GWHAAZE00000002CDS99206339921114-
GWHAAZE00000002CDS99197159919930-
GWHAAZE00000002CDS99187989919166-
GWHAAZE00000002CDS99186629918691-
GWHAAZE00000002CDS99181419918368-
GWHAAZE00000002CDS99178819918042-
GWHAAZE00000002CDS99167049916910-
GWHAAZE00000002CDS99162939916499-
GWHAAZE00000002CDS99160659916145-
GWHAAZE00000002CDS99155819915889-
Transcript Sequence

Network for GWHGAAZE005555

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01399.28PCI3745097.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03254EIF3A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.339
SRR3591706second leaf0.744
SRR3591707mature leaf0.173
SRR3591708Shoot apex1.532
SRR3591709Stem2.004
SRR3591710White floral bud4.864
SRR3591711White flower5.505
SRR3591712Green floral bud8.704
SRR3591713Yellow flower2.131
SRP173429 SRR8316895Juvenile bud stage 10.931
SRR8316896Juvenile bud stage 23.741
SRR8316897Juvenile bud stage 8.023
SRR8316894Third green stage 8.943
SRR8316900Third green stage 15.442
SRR8316901Third green stage 14.381
SRR8316898Complete white stage 1.409
SRR8316899Complete white stage 1.869
SRR8316903Complete white stage 3.141
SRR8316902Silver flowering stage3.113
SRR8316904Silver flowering stage5.330
SRR8316905Silver flowering stage1.841
SRR8316906Gold flowering stage 7.531
SRR8316907Gold flowering stage 7.370
SRR8316908Gold flowering stage 5.300
SRP132670SRR6706286Control9.416
SRR6706287Light intensity 50%8.847
SRR6706288Light intensity 20%7.692
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.741
CNS0095593Slightly white alabastrum(diploid) 27.589
CNS0095594Slightly white alabastrum(diploid) 312.465
CNS0095595Whole white alabastrum(diploid) 29.455
CNS0095596Whole white alabastrum(diploid) 311.365
CNS0095597Whole white alabastrum(diploid) 49.926
CNS0095598Silvery flower (diploied) 10.541
CNS0095599Silvery flower (diploied) 21.101
CNS0095600Silvery flower (diploied) 34.910
CNS0095601Golden flower (diploid) 10.821
CNS0095602Golden flower (diploid) 22.341
CNS0095603Golden flower (diploid) 32.488
CNS0095604Slightly white alabastrum(tetraploid) 118.752
CNS0095605Slightly white alabastrum(tetraploid) 215.705
CNS0095606Slightly white alabastrum(tetraploid) 32.489
CNS0095607Whole white alabastrum(tetraploid) 114.802
CNS0095608Whole white alabastrum(tetraploid) 215.890
CNS0095609Whole white alabastrum(tetraploid) 316.757
CNS0095610Silvery flower (tetraploid) 18.613
CNS0095611Silvery flower (tetraploid) 26.294
CNS0095612Silvery flower (tetraploid) 313.930
CNS0095613Golden flower (tetraploid) 12.967
CNS0095614Golden flower (tetraploid) 24.553
CNS0095615Golden flower (tetraploid) 34.103
CRA001975CRR073297Stem 117.674
CRR073298Stem 216.824
CRR073299Stem 311.472
CRR073300Leaf 113.191
CRR073301Leaf 211.635
CRR073302Leaf 37.768
CRR073303Juvenile bud 18.413
CRR073304Juvenile bud 23.671
CRR073305Juvenile bud 34.238
CRR073306Third green 13.399
CRR073307Third green 24.454
CRR073308Third green 34.884
CRR073309Second white 13.604
CRR073310Second white 25.460
CRR073311Second white 36.421
CRR073312Silver flowering 14.046
CRR073313Silver flowering 22.752
CRR073314Silver flowering 32.789
CRR073315Gold flowering 10.124
CRR073316Gold flowering 20.321
CRR073317Gold flowering 30.164
CRR073318Tawny withering 12.097
CRR073319Tawny withering 21.392
CRR073320Tawny withering 32.280