Gene detail

Detail information of GWHGAAZE005564

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094817.1	5.3335E-153	PREDICTED: ras-related protein RABE1c [Sesamum indicum]
Swissprot	tr\|O24466\|RAE1A_ARATH	2E-140	Ras-related protein RABE1a
trEMBL	tr\|Q41024\|Q41024_PEA	7E-151	Small GTP-binding protein {ECO:0000313\|EMBL:CAA90080.1}
TAIR10	AT5G59840.1	3E-98	Ras-related small GTP-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10018069	10021915	+
GWHAAZE00000002	mRNA	10018069	10021915	+
GWHAAZE00000002	exon	10018069	10018141	+
GWHAAZE00000002	exon	10019159	10019231	+
GWHAAZE00000002	exon	10019323	10019423	+
GWHAAZE00000002	exon	10020115	10020180	+
GWHAAZE00000002	exon	10020461	10020558	+
GWHAAZE00000002	exon	10021156	10021218	+
GWHAAZE00000002	exon	10021305	10021397	+
GWHAAZE00000002	exon	10021832	10021915	+
GWHAAZE00000002	CDS	10018069	10018141	+
GWHAAZE00000002	CDS	10019159	10019231	+
GWHAAZE00000002	CDS	10019323	10019423	+
GWHAAZE00000002	CDS	10020115	10020180	+
GWHAAZE00000002	CDS	10020461	10020558	+
GWHAAZE00000002	CDS	10021156	10021218	+
GWHAAZE00000002	CDS	10021305	10021397	+
GWHAAZE00000002	CDS	10021832	10021915	+

Transcript Sequence
>GWHTAAZE005572 ATGGCCGCTCCACCTCCTAGAGCTCGAGCGGATTATGATTACCTTATAAAGCTACTTTTGATCGGCGATAGCGGTGTGGGTAAGAGTTGCCTCCTTTTACGATTCTCAGATGGTTCCTTCACCACTAGTTTTATTACAACCATTGGCATTGATTTTAAGATAAGGACCATTGAGCTCGATGGAAAACGGATTAAACTACAGATCTGGGACACTGCTGGTCAGGAGCGATTCAGAACAATCACAACCGCTTACTATCGTGGAGCCATGGGTATTTTGCTAGTGTACGATGTAACCGATGAGTCATCCTTCAACAACATTAGGAATTGGATTCGTAACATTGAACAACATGCTTCTGACAACGTAAACAAGATACTGGTGGGCAACAAGGCTGACATGGATGAGAGCAAGAGGGCTGTTCCTACTTCAAAGGGCCAAGCACTTGCTGATGAATATGGCATCAAATTTTTCGAGACTAGTGCAAAGACGAATATGAACGTGGAGGAGGTTTTCTTTTCGATAGCTAGGGACATCAAGCAAAGACTCGCAGAAACCGACTCAAAGACCGAGCCTCAAACAATCAGGATTAGCCAAGCAGACCAGGGAACAGGGAGTGCTGAAGCTGCCCAAAAATCAGGTTGCTGTGGCTCTTAA

Network for GWHGAAZE005564

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	17	178	1.10E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07901	RAB8A, MEL	AMPK signaling pathway	map04152
		Endocytosis	map04144
		Autophagy - animal	map04140
		Tight junction	map04530
		Pancreatic secretion	map04972

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.189
	SRR3591706	second leaf	9.932
	SRR3591707	mature leaf	7.972
	SRR3591708	Shoot apex	24.919
	SRR3591709	Stem	22.242
	SRR3591710	White floral bud	23.352
	SRR3591711	White flower	19.405
	SRR3591712	Green floral bud	22.068
	SRR3591713	Yellow flower	20.675
SRP173429	SRR8316895	Juvenile bud stage	17.710
	SRR8316896	Juvenile bud stage	31.414
	SRR8316897	Juvenile bud stage	14.514
	SRR8316894	Third green stage	11.360
	SRR8316900	Third green stage	29.507
	SRR8316901	Third green stage	30.385
	SRR8316898	Complete white stage	8.553
	SRR8316899	Complete white stage	24.382
	SRR8316903	Complete white stage	15.753
	SRR8316902	Silver flowering stage	8.285
	SRR8316904	Silver flowering stage	11.348
	SRR8316905	Silver flowering stage	6.035
	SRR8316906	Gold flowering stage	15.516
	SRR8316907	Gold flowering stage	14.248
	SRR8316908	Gold flowering stage	12.753
SRP132670	SRR6706286	Control	23.947
	SRR6706287	Light intensity 50%	23.350
	SRR6706288	Light intensity 20%	23.962
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.800
	CNS0095593	Slightly white alabastrum(diploid) 2	28.831
	CNS0095594	Slightly white alabastrum(diploid) 3	41.320
	CNS0095595	Whole white alabastrum(diploid) 2	28.275
	CNS0095596	Whole white alabastrum(diploid) 3	30.187
	CNS0095597	Whole white alabastrum(diploid) 4	25.869
	CNS0095598	Silvery flower (diploied) 1	20.801
	CNS0095599	Silvery flower (diploied) 2	17.484
	CNS0095600	Silvery flower (diploied) 3	13.813
	CNS0095601	Golden flower (diploid) 1	12.619
	CNS0095602	Golden flower (diploid) 2	14.210
	CNS0095603	Golden flower (diploid) 3	11.737
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.429
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.468
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.882
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.024
	CNS0095610	Silvery flower (tetraploid) 1	14.218
	CNS0095611	Silvery flower (tetraploid) 2	14.435
	CNS0095612	Silvery flower (tetraploid) 3	14.525
	CNS0095613	Golden flower (tetraploid) 1	16.901
	CNS0095614	Golden flower (tetraploid) 2	15.345
	CNS0095615	Golden flower (tetraploid) 3	12.675
CRA001975	CRR073297	Stem 1	24.741
	CRR073298	Stem 2	21.313
	CRR073299	Stem 3	17.129
	CRR073300	Leaf 1	20.715
	CRR073301	Leaf 2	18.604
	CRR073302	Leaf 3	21.971
	CRR073303	Juvenile bud 1	17.735
	CRR073304	Juvenile bud 2	14.967
	CRR073305	Juvenile bud 3	15.749
	CRR073306	Third green 1	7.042
	CRR073307	Third green 2	11.677
	CRR073308	Third green 3	9.499
	CRR073309	Second white 1	6.673
	CRR073310	Second white 2	6.353
	CRR073311	Second white 3	5.765
	CRR073312	Silver flowering 1	4.802
	CRR073313	Silver flowering 2	7.449
	CRR073314	Silver flowering 3	6.221
	CRR073315	Gold flowering 1	9.083
	CRR073316	Gold flowering 2	9.194
	CRR073317	Gold flowering 3	9.091
	CRR073318	Tawny withering 1	21.225
	CRR073319	Tawny withering 2	25.430
	CRR073320	Tawny withering 3	22.303