Detail information of GWHGAAZE005568


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278566.10PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera]
Swissprottr|Q9LFG2|DAPF_ARATH0Diaminopimelate epimerase, chloroplastic (Precursor)
trEMBLtr|F6HQY5|F6HQY5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57034.1}
TAIR10AT3G53580.13E-138diaminopimelate epimerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1008392110088841-
GWHAAZE00000002mRNA1008392110088841-
GWHAAZE00000002exon1008392110084037-
GWHAAZE00000002exon1008426610084339-
GWHAAZE00000002exon1008474410084803-
GWHAAZE00000002exon1008558610085670-
GWHAAZE00000002exon1008613410086313-
GWHAAZE00000002exon1008691210086969-
GWHAAZE00000002exon1008755610087626-
GWHAAZE00000002exon1008794310088110-
GWHAAZE00000002exon1008868010088841-
GWHAAZE00000002CDS1008868010088841-
GWHAAZE00000002CDS1008794310088110-
GWHAAZE00000002CDS1008755610087626-
GWHAAZE00000002CDS1008691210086969-
GWHAAZE00000002CDS1008613410086313-
GWHAAZE00000002CDS1008558610085670-
GWHAAZE00000002CDS1008474410084803-
GWHAAZE00000002CDS1008426610084339-
GWHAAZE00000002CDS1008392110084037-
Transcript Sequence

Network for GWHGAAZE005568

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01678.20DAP_epimerase421627.50E-36
PF01678.20DAP_epimerase1963174.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01778dapF Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Lysine biosynthesismap00300

Gene Ontology

GO term OntologyName
GO:0009089biological_processlysine biosynthetic process via diaminopimelate
GO:0005737cellular_componentcytoplasm
GO:0008837molecular_functiondiaminopimelate epimerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf121.092
SRR3591706second leaf76.338
SRR3591707mature leaf95.225
SRR3591708Shoot apex139.273
SRR3591709Stem93.206
SRR3591710White floral bud115.356
SRR3591711White flower145.835
SRR3591712Green floral bud148.035
SRR3591713Yellow flower146.724
SRP173429 SRR8316895Juvenile bud stage 74.585
SRR8316896Juvenile bud stage 128.052
SRR8316897Juvenile bud stage 51.376
SRR8316894Third green stage 48.224
SRR8316900Third green stage 182.488
SRR8316901Third green stage 171.738
SRR8316898Complete white stage 53.270
SRR8316899Complete white stage 145.131
SRR8316903Complete white stage 99.828
SRR8316902Silver flowering stage65.287
SRR8316904Silver flowering stage86.519
SRR8316905Silver flowering stage49.032
SRR8316906Gold flowering stage 159.687
SRR8316907Gold flowering stage 173.628
SRR8316908Gold flowering stage 179.411
SRP132670SRR6706286Control149.479
SRR6706287Light intensity 50%147.551
SRR6706288Light intensity 20%159.417
CNP0000432CNS0095592Slightly white alabastrum(diploid) 193.640
CNS0095593Slightly white alabastrum(diploid) 296.345
CNS0095594Slightly white alabastrum(diploid) 389.894
CNS0095595Whole white alabastrum(diploid) 2114.287
CNS0095596Whole white alabastrum(diploid) 3131.865
CNS0095597Whole white alabastrum(diploid) 4102.293
CNS0095598Silvery flower (diploied) 165.118
CNS0095599Silvery flower (diploied) 265.293
CNS0095600Silvery flower (diploied) 3152.624
CNS0095601Golden flower (diploid) 174.157
CNS0095602Golden flower (diploid) 2152.874
CNS0095603Golden flower (diploid) 3144.037
CNS0095604Slightly white alabastrum(tetraploid) 195.061
CNS0095605Slightly white alabastrum(tetraploid) 282.332
CNS0095606Slightly white alabastrum(tetraploid) 3123.684
CNS0095607Whole white alabastrum(tetraploid) 170.410
CNS0095608Whole white alabastrum(tetraploid) 272.876
CNS0095609Whole white alabastrum(tetraploid) 3130.533
CNS0095610Silvery flower (tetraploid) 1169.470
CNS0095611Silvery flower (tetraploid) 2172.499
CNS0095612Silvery flower (tetraploid) 3228.349
CNS0095613Golden flower (tetraploid) 1154.672
CNS0095614Golden flower (tetraploid) 2184.492
CNS0095615Golden flower (tetraploid) 3182.332
CRA001975CRR073297Stem 1125.306
CRR073298Stem 2120.699
CRR073299Stem 3131.124
CRR073300Leaf 1170.819
CRR073301Leaf 2152.497
CRR073302Leaf 3168.079
CRR073303Juvenile bud 1177.184
CRR073304Juvenile bud 2186.527
CRR073305Juvenile bud 3166.869
CRR073306Third green 1127.229
CRR073307Third green 2110.213
CRR073308Third green 395.050
CRR073309Second white 1141.634
CRR073310Second white 2140.898
CRR073311Second white 3144.275
CRR073312Silver flowering 1175.688
CRR073313Silver flowering 2177.508
CRR073314Silver flowering 3161.379
CRR073315Gold flowering 179.989
CRR073316Gold flowering 2126.850
CRR073317Gold flowering 3124.806
CRR073318Tawny withering 1110.293
CRR073319Tawny withering 292.128
CRR073320Tawny withering 3100.350