Detail information of GWHGAAZE005585


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007027153.16.6371E-102RNA-binding family protein with retrovirus zinc finger-like domain, putative [Theobroma cacao]
Swissprottr|Q9FYB7|RSZ32_ARATH9E-63Serine/arginine-rich splicing factor RS2Z32
trEMBLtr|A0A061ERP0|A0A061ERP0_THECC2E-102RNA-binding family protein with retrovirus zinc finger-like domain, putative {ECO:0000313|EMBL:EOY07655.1}
TAIR10AT3G53500.29E-41RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1035821710361043+
GWHAAZE00000002mRNA1035821710361043+
GWHAAZE00000002exon1035821710358323+
GWHAAZE00000002exon1035876710358887+
GWHAAZE00000002exon1035896410359053+
GWHAAZE00000002exon1035921910359314+
GWHAAZE00000002exon1035953210359728+
GWHAAZE00000002exon1035998810360089+
GWHAAZE00000002exon1036051910361043+
GWHAAZE00000002CDS1035821710358323+
GWHAAZE00000002CDS1035876710358887+
GWHAAZE00000002CDS1035896410359053+
GWHAAZE00000002CDS1035921910359314+
GWHAAZE00000002CDS1035953210359728+
GWHAAZE00000002CDS1035998810360089+
GWHAAZE00000002CDS1036051910360927+
GWHAAZE00000002three_prime_UTR1036092810361043+
Transcript Sequence

Network for GWHGAAZE005585

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1941311.00E-05
PF00098.24zf-CCHC1601751.50E-05
PF00098.24zf-CCHC1811970.00061
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12896SFRS7 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.604
SRR3591706second leaf26.018
SRR3591707mature leaf18.607
SRR3591708Shoot apex30.016
SRR3591709Stem19.285
SRR3591710White floral bud18.241
SRR3591711White flower19.364
SRR3591712Green floral bud17.042
SRR3591713Yellow flower17.340
SRP173429 SRR8316895Juvenile bud stage 18.912
SRR8316896Juvenile bud stage 27.127
SRR8316897Juvenile bud stage 12.507
SRR8316894Third green stage 10.712
SRR8316900Third green stage 21.147
SRR8316901Third green stage 28.916
SRR8316898Complete white stage 14.719
SRR8316899Complete white stage 29.793
SRR8316903Complete white stage 24.370
SRR8316902Silver flowering stage11.300
SRR8316904Silver flowering stage13.781
SRR8316905Silver flowering stage6.217
SRR8316906Gold flowering stage 13.305
SRR8316907Gold flowering stage 17.728
SRR8316908Gold flowering stage 18.306
SRP132670SRR6706286Control19.855
SRR6706287Light intensity 50%20.391
SRR6706288Light intensity 20%22.750
CNP0000432CNS0095592Slightly white alabastrum(diploid) 135.682
CNS0095593Slightly white alabastrum(diploid) 234.096
CNS0095594Slightly white alabastrum(diploid) 334.369
CNS0095595Whole white alabastrum(diploid) 225.058
CNS0095596Whole white alabastrum(diploid) 324.282
CNS0095597Whole white alabastrum(diploid) 420.459
CNS0095598Silvery flower (diploied) 129.043
CNS0095599Silvery flower (diploied) 221.564
CNS0095600Silvery flower (diploied) 312.759
CNS0095601Golden flower (diploid) 119.905
CNS0095602Golden flower (diploid) 29.578
CNS0095603Golden flower (diploid) 310.453
CNS0095604Slightly white alabastrum(tetraploid) 128.888
CNS0095605Slightly white alabastrum(tetraploid) 230.172
CNS0095606Slightly white alabastrum(tetraploid) 335.763
CNS0095607Whole white alabastrum(tetraploid) 121.521
CNS0095608Whole white alabastrum(tetraploid) 216.806
CNS0095609Whole white alabastrum(tetraploid) 323.548
CNS0095610Silvery flower (tetraploid) 123.333
CNS0095611Silvery flower (tetraploid) 212.529
CNS0095612Silvery flower (tetraploid) 315.041
CNS0095613Golden flower (tetraploid) 118.325
CNS0095614Golden flower (tetraploid) 218.229
CNS0095615Golden flower (tetraploid) 38.458
CRA001975CRR073297Stem 128.104
CRR073298Stem 224.390
CRR073299Stem 312.946
CRR073300Leaf 124.742
CRR073301Leaf 229.259
CRR073302Leaf 311.266
CRR073303Juvenile bud 112.877
CRR073304Juvenile bud 25.745
CRR073305Juvenile bud 38.251
CRR073306Third green 13.952
CRR073307Third green 22.670
CRR073308Third green 35.036
CRR073309Second white 11.219
CRR073310Second white 21.992
CRR073311Second white 31.655
CRR073312Silver flowering 10.715
CRR073313Silver flowering 20.518
CRR073314Silver flowering 30.964
CRR073315Gold flowering 16.649
CRR073316Gold flowering 29.891
CRR073317Gold flowering 35.387
CRR073318Tawny withering 111.200
CRR073319Tawny withering 210.353
CRR073320Tawny withering 38.579