Detail information of GWHGAAZE005595


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP41243.10hypothetical protein JCGZ_15650 [Jatropha curcas]
Swissprottr|Q42510|GNOM_ARATH0ARF guanine-nucleotide exchange factor GNOM
trEMBLtr|A0A067L230|A0A067L230_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP41243.1}
TAIR10AT1G13980.20sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1045638610465250-
GWHAAZE00000002mRNA1045638610465250-
GWHAAZE00000002exon1046451010465250-
GWHAAZE00000002exon1045910210459572-
GWHAAZE00000002exon1045638610458980-
GWHAAZE00000002CDS1046451010465250-
GWHAAZE00000002CDS1045910210459572-
GWHAAZE00000002CDS1045638610458980-
Transcript Sequence

Network for GWHGAAZE005595

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12783.8Sec7_N3194054.40E-10
PF01369.21Sec75257085.10E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18443GBF1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0032012biological_processregulation of ARF protein signal transduction
GO:0005086molecular_functionARF guanyl-nucleotide exchange factor activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005595.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.535Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.054
SRR3591706second leaf8.996
SRR3591707mature leaf7.792
SRR3591708Shoot apex13.213
SRR3591709Stem12.595
SRR3591710White floral bud8.769
SRR3591711White flower8.171
SRR3591712Green floral bud12.958
SRR3591713Yellow flower5.228
SRP173429 SRR8316895Juvenile bud stage 7.380
SRR8316896Juvenile bud stage 8.962
SRR8316897Juvenile bud stage 4.020
SRR8316894Third green stage 4.533
SRR8316900Third green stage 10.510
SRR8316901Third green stage 9.999
SRR8316898Complete white stage 3.398
SRR8316899Complete white stage 14.345
SRR8316903Complete white stage 6.393
SRR8316902Silver flowering stage1.904
SRR8316904Silver flowering stage3.653
SRR8316905Silver flowering stage1.610
SRR8316906Gold flowering stage 6.252
SRR8316907Gold flowering stage 5.152
SRR8316908Gold flowering stage 5.982
SRP132670SRR6706286Control11.083
SRR6706287Light intensity 50%12.094
SRR6706288Light intensity 20%13.108
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.264
CNS0095593Slightly white alabastrum(diploid) 25.630
CNS0095594Slightly white alabastrum(diploid) 34.825
CNS0095595Whole white alabastrum(diploid) 25.470
CNS0095596Whole white alabastrum(diploid) 35.037
CNS0095597Whole white alabastrum(diploid) 45.261
CNS0095598Silvery flower (diploied) 18.789
CNS0095599Silvery flower (diploied) 26.063
CNS0095600Silvery flower (diploied) 310.893
CNS0095601Golden flower (diploid) 15.952
CNS0095602Golden flower (diploid) 214.687
CNS0095603Golden flower (diploid) 313.228
CNS0095604Slightly white alabastrum(tetraploid) 19.939
CNS0095605Slightly white alabastrum(tetraploid) 27.542
CNS0095606Slightly white alabastrum(tetraploid) 325.211
CNS0095607Whole white alabastrum(tetraploid) 16.818
CNS0095608Whole white alabastrum(tetraploid) 24.905
CNS0095609Whole white alabastrum(tetraploid) 315.277
CNS0095610Silvery flower (tetraploid) 111.733
CNS0095611Silvery flower (tetraploid) 213.998
CNS0095612Silvery flower (tetraploid) 38.678
CNS0095613Golden flower (tetraploid) 13.991
CNS0095614Golden flower (tetraploid) 29.727
CNS0095615Golden flower (tetraploid) 38.122
CRA001975CRR073297Stem 122.723
CRR073298Stem 222.827
CRR073299Stem 324.152
CRR073300Leaf 123.392
CRR073301Leaf 219.785
CRR073302Leaf 318.702
CRR073303Juvenile bud 120.570
CRR073304Juvenile bud 215.895
CRR073305Juvenile bud 332.185
CRR073306Third green 14.257
CRR073307Third green 23.607
CRR073308Third green 36.072
CRR073309Second white 16.217
CRR073310Second white 24.068
CRR073311Second white 34.789
CRR073312Silver flowering 13.446
CRR073313Silver flowering 25.171
CRR073314Silver flowering 33.128
CRR073315Gold flowering 17.010
CRR073316Gold flowering 213.247
CRR073317Gold flowering 317.077
CRR073318Tawny withering 117.747
CRR073319Tawny withering 210.650
CRR073320Tawny withering 318.136