Gene detail

Detail information of GWHGAAZE005601

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275978.1	0	PREDICTED: WRKY transcription factor 44 [Vitis vinifera]
Swissprot	tr\|Q9ZUU0\|WRK44_ARATH	4E-94	WRKY transcription factor 44
trEMBL	tr\|F6HQV7\|F6HQV7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57005.1}
TAIR10	AT2G37260.1	1E-81	WRKY family transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10514792	10524135	-
GWHAAZE00000002	mRNA	10514792	10524135	-
GWHAAZE00000002	exon	10514792	10515201	-
GWHAAZE00000002	exon	10516119	10516259	-
GWHAAZE00000002	exon	10516925	10517036	-
GWHAAZE00000002	exon	10521479	10521617	-
GWHAAZE00000002	exon	10522032	10522190	-
GWHAAZE00000002	exon	10522539	10523278	-
GWHAAZE00000002	exon	10523450	10523491	-
GWHAAZE00000002	exon	10523809	10524135	-
GWHAAZE00000002	five_prime_UTR	10524028	10524135	-
GWHAAZE00000002	CDS	10523809	10524027	-
GWHAAZE00000002	CDS	10523450	10523491	-
GWHAAZE00000002	CDS	10522539	10523278	-
GWHAAZE00000002	CDS	10522032	10522190	-
GWHAAZE00000002	CDS	10521479	10521617	-
GWHAAZE00000002	CDS	10516925	10517036	-
GWHAAZE00000002	CDS	10516119	10516259	-
GWHAAZE00000002	CDS	10514792	10515201	-

Transcript Sequence
>GWHTAAZE005609 AAGCGTGAATTATGCAGGTTCAAAGATAATGATTTTTGAGTTCAAGATTTGAACTCGTATACCTAGGAGTCTAAACTCGAAGATTTTGCAAGTAAGTACTTCTATAAGATGGAGGTTAAAGAGGCAGAGAGGACTGTTATAGCAAAACCTGTTGCTTCAAGGCCTAATTGTTCCACTTTCAAGTCCTTCTCGGAGCTACTTGCTGGTGCCATTAGTGGATCTCCCTCTAATGTGTGTGCTGAAAATGCGGTCAGTGCCATTAGACCAAAGACTGTGAGATTCAAGCCAGCGGTTGGCGGTGATCTGGTTGAGCCGGTTTCTTCCCAGGCTGAGATGCCTCAACGTGCAGTTGCCCATTCATCTGATAAGGGAAACTCAAATCTTAGTCACCAACAAGCACTAGCTCAGGTTGAGTCTCGAGTGCAACCTCCAAACAATATTAATCAATATCTGCACCAACCCAAATCAGATATTAACTCGAATATTCCTCAAAATTTTCCATCACAAACAGAATCTGAGAAAATGACTGAGACACCAAAGATGAGGCCAGAGAACTTGGAAGATGACCTTATATCTTTACCACCCACAAGTACCGCGGACCGCCCTTCATATGATGGATATAACTGGAGAAAATATGGTCAAAAACAAGTCAAAGGGAGCGAGTACCCGAGAAGTTACTACAAATGCACGCACCCCAACTGTCCAGTGAAAAAAAAGGTTGAAAGATCATTGGATGGGGAAATAGCGGAAATTGTGTACAAGGGAGAGCACAATCACTCAAAGCCTCAGCCTCCAAGGCGAAACACTTTGGCTGGACAATGGCAACAAGGACTTGTACATGATGGGGCAGTCCAAGAATCGAATTACCCGTTGTTAAATAATAAACTTAGCGAGAGGAATGAAGGTTCGAGGGGTAAAGTAGAAAATCAGAATGAAGTTGGATTCTCGATCCAATCTATTAATTTAGGAAAAAATCCAATATCTTATGATCATGTTATGAATGGAGCATTGAGCGGTACTCCTGATAATTCTTGTGGTGTTAGTGGGGATTGTGAGGAAGGAAGCATAGGATTGGAGGCAGAGGATGAGGAACCCAAAAGTAAGAGAAGGAAAAATGGGAACCAATCCAATGACGTGGGAATATCAGGGGAAGTTGTACAAGATGCTTGTGTTGTGGTCCAAAGTGGCATTGGTTCTGAGATTGTAGGAGATGGCTTTCGCTGGAGAAAATATGGGCAGAAAGTTGTCAAAGGAAATCCATATCCAAGAAGTTACTACAGATGTACAAGTCCGAAGTGCAATGTGCGCAAGCACGTTGAAAGAGCATCAGACGATCCAAGAGCCTTTATCACAACTTATGAAGGTAAACATAACCACGACATGCCAAACAAGGCCACCAATCAAACGGAGGAGGAAATGGGTTGGTTTCCATGTTCAGGACAATCAAAGCCGACTGCAAAGAAGAAGAGGAAGAAAATACGACAGCCAGTAGTCGATCCCATTCAACCCAGCTCTTCAGAGAATTTGAAGGCATCATTGAAGACAAAAGAAGTATCTAACGAAGGCGGGCCCGATTATGTTGCTGCTCGGACTTTCACATTCCGTGAATTGGCAGCTGCAACTAAAAATTTCAGGGGCGATTGTCTTGTTGGAGAGGGAGACCCCTTGCCTGATAAAAAGCGACTTGATTGGAATACAAGAATGAAAGTGGCTGCTGGAGCAGCAAAAGGACTGGAGTATTTACATGACAAAGCTAGTCCCCCAGTAATATATCGTGATTTAAAATGCTCGAACATTTTGCTTGGTGAGGGTTATCATCCGAAGCTATCCGATTTTGGCTTGGCCAAGCTTGGGCCTGTTGGGGACAATACCCATGTATCTACGAGGGTTATGGGTACCTACGGGTATTGTGCCCCGGAGTATGCAATGACGGGACAGTTGACTTTGAAATCGGATGTTTATAGCTTTGGGGTTGTTCTTTTAGAGATCATTACAGGCAGGAAAGCAATTGATAATTCAAAAACTGCGGGGGAGCACAATCTGGTTGCTTGGGTAAAGAGATCTCCTTAA

Network for GWHGAAZE005601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	169	223	2.20E-25
PF03106.16	WRKY	368	424	1.10E-25
PF07714.18	PK_Tyr_Ser-Thr	480	636	7.40E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0006468	biological_process	protein phosphorylation
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.800
	SRR3591706	second leaf	34.169
	SRR3591707	mature leaf	51.874
	SRR3591708	Shoot apex	35.600
	SRR3591709	Stem	40.629
	SRR3591710	White floral bud	28.533
	SRR3591711	White flower	40.704
	SRR3591712	Green floral bud	38.450
	SRR3591713	Yellow flower	22.418
SRP173429	SRR8316895	Juvenile bud stage	23.305
	SRR8316896	Juvenile bud stage	30.599
	SRR8316897	Juvenile bud stage	19.757
	SRR8316894	Third green stage	13.404
	SRR8316900	Third green stage	30.586
	SRR8316901	Third green stage	30.274
	SRR8316898	Complete white stage	10.601
	SRR8316899	Complete white stage	48.081
	SRR8316903	Complete white stage	20.247
	SRR8316902	Silver flowering stage	10.338
	SRR8316904	Silver flowering stage	13.640
	SRR8316905	Silver flowering stage	8.268
	SRR8316906	Gold flowering stage	24.758
	SRR8316907	Gold flowering stage	23.423
	SRR8316908	Gold flowering stage	29.689
SRP132670	SRR6706286	Control	40.731
	SRR6706287	Light intensity 50%	38.192
	SRR6706288	Light intensity 20%	38.661
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.442
	CNS0095593	Slightly white alabastrum(diploid) 2	21.539
	CNS0095594	Slightly white alabastrum(diploid) 3	24.969
	CNS0095595	Whole white alabastrum(diploid) 2	21.889
	CNS0095596	Whole white alabastrum(diploid) 3	17.132
	CNS0095597	Whole white alabastrum(diploid) 4	20.247
	CNS0095598	Silvery flower (diploied) 1	24.477
	CNS0095599	Silvery flower (diploied) 2	20.621
	CNS0095600	Silvery flower (diploied) 3	28.113
	CNS0095601	Golden flower (diploid) 1	24.006
	CNS0095602	Golden flower (diploid) 2	29.419
	CNS0095603	Golden flower (diploid) 3	30.395
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.489
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.451
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.109
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.670
	CNS0095610	Silvery flower (tetraploid) 1	27.470
	CNS0095611	Silvery flower (tetraploid) 2	22.218
	CNS0095612	Silvery flower (tetraploid) 3	22.122
	CNS0095613	Golden flower (tetraploid) 1	16.045
	CNS0095614	Golden flower (tetraploid) 2	23.952
	CNS0095615	Golden flower (tetraploid) 3	18.921
CRA001975	CRR073297	Stem 1	37.376
	CRR073298	Stem 2	36.147
	CRR073299	Stem 3	30.737
	CRR073300	Leaf 1	32.980
	CRR073301	Leaf 2	34.398
	CRR073302	Leaf 3	25.135
	CRR073303	Juvenile bud 1	22.797
	CRR073304	Juvenile bud 2	18.531
	CRR073305	Juvenile bud 3	27.734
	CRR073306	Third green 1	13.672
	CRR073307	Third green 2	9.792
	CRR073308	Third green 3	12.400
	CRR073309	Second white 1	11.728
	CRR073310	Second white 2	11.466
	CRR073311	Second white 3	12.532
	CRR073312	Silver flowering 1	12.002
	CRR073313	Silver flowering 2	10.630
	CRR073314	Silver flowering 3	10.322
	CRR073315	Gold flowering 1	31.944
	CRR073316	Gold flowering 2	43.319
	CRR073317	Gold flowering 3	25.600
	CRR073318	Tawny withering 1	29.872
	CRR073319	Tawny withering 2	27.032
	CRR073320	Tawny withering 3	31.455