Gene detail

Detail information of GWHGAAZE005605

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACH87169.1	7.8629E-146	MYB transcription factor [Camellia sinensis]
Swissprot	tr\|Q8RWU3\|RVE8_ARATH	2E-111	Protein REVEILLE 8
trEMBL	tr\|B5TV64\|B5TV64_CAMSI	3E-146	MYB transcription factor {ECO:0000313\|EMBL:ACH87169.1}
TAIR10	AT3G09600.1	1E-72	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10594485	10600090	+
GWHAAZE00000002	mRNA	10594485	10600090	+
GWHAAZE00000002	exon	10594485	10594633	+
GWHAAZE00000002	exon	10595841	10595898	+
GWHAAZE00000002	exon	10598329	10598452	+
GWHAAZE00000002	exon	10598557	10598709	+
GWHAAZE00000002	exon	10598818	10598943	+
GWHAAZE00000002	exon	10599972	10600090	+
GWHAAZE00000002	CDS	10594485	10594633	+
GWHAAZE00000002	CDS	10595841	10595898	+
GWHAAZE00000002	CDS	10598329	10598452	+
GWHAAZE00000002	CDS	10598557	10598709	+
GWHAAZE00000002	CDS	10598818	10598943	+
GWHAAZE00000002	CDS	10599972	10600090	+

Transcript Sequence
>GWHTAAZE005613 ATGAATTCTTCTTCGAATTCTCAATCCATGTCTAACTCTACTCCTACCGATGCTTCCGGCAAGAAGGTCCGTAAACCCTACACCATCACTAAGTCTAGAGAAAGCTGGACCGACGAAGAACACGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGCGACTGGAAAAAAATTGAAGATTTTGTTGGTTCAAAGACAGTAATTCAGATCCGCAGTCATGCCCAGAAATACTTTCTGAAGGTCCAAAAGAATGGAGCAATAGCACATGTGCCACCACCTCGTCCCAAGCGCAAAGCTGCTCATCCTTACCCCCAGAAGGCACCAAAAAATGTATTATTGCCATTGGAAGCCTCTATGGCATATCCTTCATTGCATTCTCTTGCACCTGGATATTCTCCATGGGATGATACTTCCATGCTTATAAACAGTCCATCAAGTGGAATCATGCCAACCCAAGATGAATACAATCTTCACGGAGTTGAAGCTGATATGAGATCGAAGGGTGCTGCAAGGATTAGTAACATTGATATTAGCGGCATAGGAAGCTCAAGTAAAACTCTACCAATTTCTGAGTTAACACAGCAAGGGAAGCAAGGTTCCCCAGTTCATGGTATACCAGATTTTGCTGAAGTCTATAGCTTCATTGGTAGCGTCTTTGATCCAGAAACTAAAGGTCATGTACAAAAACTGAAGGAGATGGATCCTATTAATTTTGAAACTGTGAGTTAA

Network for GWHGAAZE005605

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	33	77	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.587
	SRR3591706	second leaf	43.584
	SRR3591707	mature leaf	122.535
	SRR3591708	Shoot apex	15.524
	SRR3591709	Stem	22.410
	SRR3591710	White floral bud	58.868
	SRR3591711	White flower	75.059
	SRR3591712	Green floral bud	14.202
	SRR3591713	Yellow flower	72.472
SRP173429	SRR8316895	Juvenile bud stage	12.586
	SRR8316896	Juvenile bud stage	19.203
	SRR8316897	Juvenile bud stage	15.019
	SRR8316894	Third green stage	7.579
	SRR8316900	Third green stage	20.139
	SRR8316901	Third green stage	24.532
	SRR8316898	Complete white stage	19.082
	SRR8316899	Complete white stage	26.256
	SRR8316903	Complete white stage	30.267
	SRR8316902	Silver flowering stage	52.766
	SRR8316904	Silver flowering stage	64.461
	SRR8316905	Silver flowering stage	34.758
	SRR8316906	Gold flowering stage	112.741
	SRR8316907	Gold flowering stage	106.833
	SRR8316908	Gold flowering stage	116.156
SRP132670	SRR6706286	Control	51.072
	SRR6706287	Light intensity 50%	51.643
	SRR6706288	Light intensity 20%	46.401
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.232
	CNS0095593	Slightly white alabastrum(diploid) 2	10.164
	CNS0095594	Slightly white alabastrum(diploid) 3	8.382
	CNS0095595	Whole white alabastrum(diploid) 2	7.138
	CNS0095596	Whole white alabastrum(diploid) 3	4.532
	CNS0095597	Whole white alabastrum(diploid) 4	7.642
	CNS0095598	Silvery flower (diploied) 1	16.557
	CNS0095599	Silvery flower (diploied) 2	17.596
	CNS0095600	Silvery flower (diploied) 3	31.687
	CNS0095601	Golden flower (diploid) 1	23.051
	CNS0095602	Golden flower (diploid) 2	34.041
	CNS0095603	Golden flower (diploid) 3	34.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.111
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.294
	CNS0095610	Silvery flower (tetraploid) 1	35.340
	CNS0095611	Silvery flower (tetraploid) 2	29.157
	CNS0095612	Silvery flower (tetraploid) 3	28.801
	CNS0095613	Golden flower (tetraploid) 1	34.692
	CNS0095614	Golden flower (tetraploid) 2	45.317
	CNS0095615	Golden flower (tetraploid) 3	98.693
CRA001975	CRR073297	Stem 1	1.182
	CRR073298	Stem 2	1.007
	CRR073299	Stem 3	0.344
	CRR073300	Leaf 1	4.245
	CRR073301	Leaf 2	4.093
	CRR073302	Leaf 3	2.693
	CRR073303	Juvenile bud 1	4.424
	CRR073304	Juvenile bud 2	7.176
	CRR073305	Juvenile bud 3	3.758
	CRR073306	Third green 1	38.462
	CRR073307	Third green 2	26.237
	CRR073308	Third green 3	34.565
	CRR073309	Second white 1	29.201
	CRR073310	Second white 2	49.037
	CRR073311	Second white 3	51.751
	CRR073312	Silver flowering 1	29.603
	CRR073313	Silver flowering 2	22.979
	CRR073314	Silver flowering 3	23.634
	CRR073315	Gold flowering 1	0.921
	CRR073316	Gold flowering 2	0.982
	CRR073317	Gold flowering 3	0.100
	CRR073318	Tawny withering 1	1.410
	CRR073319	Tawny withering 2	1.432
	CRR073320	Tawny withering 3	0.620