Gene detail

Detail information of GWHGAAZE005606

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606014.1	7.4062E-173	PREDICTED: floral homeotic protein APETALA 2-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	2E-99	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|M1CP82\|M1CP82_SOLTU	2E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400071732}
TAIR10	AT2G28550.3	3E-90	related to AP2.7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10617321	10620702	+
GWHAAZE00000002	mRNA	10617321	10620702	+
GWHAAZE00000002	exon	10617321	10617793	+
GWHAAZE00000002	exon	10618288	10618313	+
GWHAAZE00000002	exon	10618432	10618462	+
GWHAAZE00000002	exon	10618572	10618659	+
GWHAAZE00000002	exon	10618758	10618903	+
GWHAAZE00000002	exon	10619068	10619112	+
GWHAAZE00000002	exon	10619222	10619325	+
GWHAAZE00000002	exon	10619450	10619583	+
GWHAAZE00000002	exon	10619823	10619924	+
GWHAAZE00000002	exon	10620273	10620702	+
GWHAAZE00000002	CDS	10617321	10617793	+
GWHAAZE00000002	CDS	10618288	10618313	+
GWHAAZE00000002	CDS	10618432	10618462	+
GWHAAZE00000002	CDS	10618572	10618659	+
GWHAAZE00000002	CDS	10618758	10618903	+
GWHAAZE00000002	CDS	10619068	10619112	+
GWHAAZE00000002	CDS	10619222	10619325	+
GWHAAZE00000002	CDS	10619450	10619583	+
GWHAAZE00000002	CDS	10619823	10619924	+
GWHAAZE00000002	CDS	10620273	10620521	+
GWHAAZE00000002	three_prime_UTR	10620522	10620702	+

Transcript Sequence
>GWHTAAZE005614 ATGTTGGACCTCAATCTCACCGTTGTTTCACCGGATTCGATCTACGATCGACAAATGGACGACTCCGGCACTTCCAATTCCTCGATCGTCAATGTGGATTCCTCCAGCAACGCCGGCGATGAAGAGTACTCTTTCCCTGGCTTCGCTTATAATTTCGATATACTCAAAACAAACAGACAAGGTAGTAATGAGTGTGAAGACGCCGATAATCAGAGCGTTAGGCCTGGTTTTGTGACGAAGCAGCTTTTTCCGGCCATCGGAGGAGAGGGGCCGTCTTCGTCTGCTAATCAGCAGCGGTTGGATCTCTCGTTCAAGGAGGTGAGTTACGGAGCGGCTGCTGAGGAGAGAGCATTGATGCCGCAGCAACGTCAGCAGCAGTTGAAGAAGAGTAGGAGAGGACCTAGGTCTCGGAGTTCGCAGTATCGAGGAGTCACGTTTTACCGGCGAACAGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAGCAGGTTTATTTGGGGGGGTTTGACACCGCACATGCTGCAGCTAGGGCTTACGATCGTGCTGCAATTAAGTTCCGCGGACTTGATGCAGATATCAATTTTAATATCACCGACTATGATGAAGATCTTAAGCAGATGAAGAACTTGACGAAGGAAGAATTTGTGCACATACTTCGCCGGCAAAGCACTGGGTTCTCTAGAGGAAGTTCGAAATTCAGGGGAGTTACACTACACAAATGTGGACGATGGGAAGCTCGAATGGGACAATTTCTTGGCAAGAAGTATGTTTATCTTGGGCTGTTTGATAGCGAGATAGAAGCTGCAAGGGCTTATGACAAGGCTGCTATTAAATGCAATGGAAGGGAAGCAGTCACCAACTTTGAGCCCAGCACATATGAAGCGGAGTTGAGTTCTGAGGCTGGTAATGGAGGCAGCACCCATAGTCTGGATCTGAATTTGGGTATTGCTCCTCCTTATTTTCCTGAAGTACACAAGGAGATTGACTATGCGGGGGGTTTCCATTCCCAGTATTCCTCCGGAATCACTGCTGAGACAGAAACAAGGATTAAGAACTCAGTCGGGTCTCAACTGCCTCATGGCCAAGGAATAGTGTCCGAGCACCCTCCTCTGTGGAACAGTGTGAATAGTTTCTTTCCCGCAGACATGGGAAGAGCAATAGAGAAGAGTATGGAAGTTGATTCAACGCCAAACTGGGGATGGCATATCCAGGGCCCTTACGGTGGAATAAATCAATTACCAGTGCAAATCTTTTCTACTGCAGCATCATCAGGATTCGCTACTCCAACAAACGCTGCTTCATCAGCTGCTCCTCCTCATCATTTTCTGAGTACAGTACCCGTTCCACATCATAACTACCCGACTACCAACGTACCCCGTTACTACTGTAGGAGCTGAAATATCACAAGCAGGTAAAGAAAAAAACGCACGAAGAAGAATGGGTTGGCAAACATTGCAAACTAGCTACCTCAATGAATTGTTCGTTCTAGTTCCTTTTAATTACTACCAGGTCATTTTATTTTGTCAGATAATTTCTGCTGTAAAAAAGTGCGCAGCTTCTAAATCTACATGTTTACCC

Network for GWHGAAZE005606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	140	188	2.40E-10
PF00847.21	AP2	231	280	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.436
	SRR3591706	second leaf	15.066
	SRR3591707	mature leaf	2.871
	SRR3591708	Shoot apex	16.269
	SRR3591709	Stem	7.780
	SRR3591710	White floral bud	13.102
	SRR3591711	White flower	10.802
	SRR3591712	Green floral bud	21.612
	SRR3591713	Yellow flower	0.695
SRP173429	SRR8316895	Juvenile bud stage	10.033
	SRR8316896	Juvenile bud stage	10.877
	SRR8316897	Juvenile bud stage	5.633
	SRR8316894	Third green stage	6.525
	SRR8316900	Third green stage	14.671
	SRR8316901	Third green stage	9.822
	SRR8316898	Complete white stage	4.107
	SRR8316899	Complete white stage	21.587
	SRR8316903	Complete white stage	6.124
	SRR8316902	Silver flowering stage	0.781
	SRR8316904	Silver flowering stage	0.580
	SRR8316905	Silver flowering stage	0.454
	SRR8316906	Gold flowering stage	0.638
	SRR8316907	Gold flowering stage	1.514
	SRR8316908	Gold flowering stage	0.742
SRP132670	SRR6706286	Control	19.476
	SRR6706287	Light intensity 50%	21.820
	SRR6706288	Light intensity 20%	24.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.220
	CNS0095593	Slightly white alabastrum(diploid) 2	11.390
	CNS0095594	Slightly white alabastrum(diploid) 3	9.725
	CNS0095595	Whole white alabastrum(diploid) 2	13.054
	CNS0095596	Whole white alabastrum(diploid) 3	7.720
	CNS0095597	Whole white alabastrum(diploid) 4	9.742
	CNS0095598	Silvery flower (diploied) 1	21.180
	CNS0095599	Silvery flower (diploied) 2	19.354
	CNS0095600	Silvery flower (diploied) 3	5.883
	CNS0095601	Golden flower (diploid) 1	14.919
	CNS0095602	Golden flower (diploid) 2	5.565
	CNS0095603	Golden flower (diploid) 3	6.269
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.390
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.814
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.301
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.154
	CNS0095610	Silvery flower (tetraploid) 1	3.280
	CNS0095611	Silvery flower (tetraploid) 2	7.343
	CNS0095612	Silvery flower (tetraploid) 3	11.578
	CNS0095613	Golden flower (tetraploid) 1	0.679
	CNS0095614	Golden flower (tetraploid) 2	1.354
	CNS0095615	Golden flower (tetraploid) 3	0.237
CRA001975	CRR073297	Stem 1	21.570
	CRR073298	Stem 2	18.008
	CRR073299	Stem 3	19.102
	CRR073300	Leaf 1	16.293
	CRR073301	Leaf 2	15.848
	CRR073302	Leaf 3	10.403
	CRR073303	Juvenile bud 1	9.936
	CRR073304	Juvenile bud 2	9.138
	CRR073305	Juvenile bud 3	10.739
	CRR073306	Third green 1	4.714
	CRR073307	Third green 2	2.478
	CRR073308	Third green 3	2.931
	CRR073309	Second white 1	1.140
	CRR073310	Second white 2	0.448
	CRR073311	Second white 3	0.341
	CRR073312	Silver flowering 1	0.132
	CRR073313	Silver flowering 2	0.068
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.091
	CRR073316	Gold flowering 2	2.303
	CRR073317	Gold flowering 3	0.767
	CRR073318	Tawny withering 1	3.611
	CRR073319	Tawny withering 2	2.573
	CRR073320	Tawny withering 3	3.473