Gene detail

Detail information of GWHGAAZE005607

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267988.1	3.9662E-131	cytosolic ascorbate peroxidase [Vitis vinifera]
Swissprot	tr\|Q9FE01\|APX2_ORYSJ	8E-128	L-ascorbate peroxidase 2, cytosolic
trEMBL	tr\|A9UFX7\|A9UFX7_VITVI	1E-131	Cytosolic ascorbate peroxidase {ECO:0000313\|EMBL:ABX79340.1}
TAIR10	AT3G09640.2	2E-92	ascorbate peroxidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10658341	10661896	+
GWHAAZE00000002	mRNA	10658341	10661896	+
GWHAAZE00000002	exon	10658341	10658471	+
GWHAAZE00000002	exon	10659567	10659741	+
GWHAAZE00000002	exon	10660617	10660682	+
GWHAAZE00000002	exon	10660834	10660882	+
GWHAAZE00000002	exon	10661056	10661138	+
GWHAAZE00000002	exon	10661482	10661561	+
GWHAAZE00000002	exon	10661645	10661747	+
GWHAAZE00000002	exon	10661834	10661896	+
GWHAAZE00000002	CDS	10658341	10658471	+
GWHAAZE00000002	CDS	10659567	10659741	+
GWHAAZE00000002	CDS	10660617	10660682	+
GWHAAZE00000002	CDS	10660834	10660882	+
GWHAAZE00000002	CDS	10661056	10661138	+
GWHAAZE00000002	CDS	10661482	10661561	+
GWHAAZE00000002	CDS	10661645	10661747	+
GWHAAZE00000002	CDS	10661834	10661896	+

Transcript Sequence
>GWHTAAZE005615 GAACCTGACGCCATCAAAAAGCGGTATCCATCATTTAGTGACGAGTATCGCGAGGAAATTAAAGAGTGCAAAAAGAAGCTTGAAGTATTCATCACTGAGAAGCAATGTGCTCCGTTGATGCTACGATTAGCGTGGCACTCAGCTGGAACGTATGATGTAAAGACGAAAACAGGGGGCCCATTTGGAACGATGAAAGATCCAACTGAACAGGGTTACGAACTAAACAAGGGCCTCGATATTGCTGTGAGGCTTTTGGAGCCCATCAAGCAACAGTTCCCAACCATCACTTATGCCGACTTTTATCAGTTGGCTGGAGTTGTGGCTGTTAAAGTCACAGGAGGTCCCAAGATTCCATTCCACCCTGGGAGACCGGACAAACCTACACCACCTCCAGATGGCCGATTGATTGATGCCGTTAAAGATGAATATAATCTAAGGAAAAAATTTGGCCGCATGGGTTTAAGTGATAAAGAGATTGTTGTCTTATCTGGTGCTCACACTCTTGGAAGGTGCCATAGGGAGCGGAGTGGATTTGAGGGGCCTTGGACCAACAATCCTCTTGTATTCGACAATAGCTACTTTAAGGAACTCGTTAGCGGAGAGAAACCAGATCTTATTCAGCTGCCAACAGACAAACTTCTTGTGACAGATCCAGAATTCCAACCTTTTGTTGAAAAATACAGTAATGATCAAGATGCCTTCTTTAAAGATTATGCTGAAGCTCATTTAACGCTATCAGAGCTTGGGTAA

Network for GWHGAAZE005607

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	29	230	7.90E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00434	E1.11.1.11	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.132
	SRR3591706	second leaf	0.078
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.284
	SRR3591709	Stem	0.064
	SRR3591710	White floral bud	2.073
	SRR3591711	White flower	0.456
	SRR3591712	Green floral bud	65.057
	SRR3591713	Yellow flower	0.100
SRP173429	SRR8316895	Juvenile bud stage	21.028
	SRR8316896	Juvenile bud stage	54.014
	SRR8316897	Juvenile bud stage	27.032
	SRR8316894	Third green stage	17.948
	SRR8316900	Third green stage	57.368
	SRR8316901	Third green stage	64.614
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.485
	SRR8316903	Complete white stage	0.251
	SRR8316902	Silver flowering stage	0.123
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	25.129
	SRR6706287	Light intensity 50%	20.715
	SRR6706288	Light intensity 20%	20.019
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	72.699
	CNS0095593	Slightly white alabastrum(diploid) 2	47.116
	CNS0095594	Slightly white alabastrum(diploid) 3	87.956
	CNS0095595	Whole white alabastrum(diploid) 2	91.490
	CNS0095596	Whole white alabastrum(diploid) 3	130.962
	CNS0095597	Whole white alabastrum(diploid) 4	95.714
	CNS0095598	Silvery flower (diploied) 1	0.241
	CNS0095599	Silvery flower (diploied) 2	0.749
	CNS0095600	Silvery flower (diploied) 3	0.099
	CNS0095601	Golden flower (diploid) 1	0.435
	CNS0095602	Golden flower (diploid) 2	0.126
	CNS0095603	Golden flower (diploid) 3	0.274
	CNS0095604	Slightly white alabastrum(tetraploid) 1	140.309
	CNS0095605	Slightly white alabastrum(tetraploid) 2	149.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	214.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	185.998
	CNS0095609	Whole white alabastrum(tetraploid) 3	109.909
	CNS0095610	Silvery flower (tetraploid) 1	0.072
	CNS0095611	Silvery flower (tetraploid) 2	0.490
	CNS0095612	Silvery flower (tetraploid) 3	0.079
	CNS0095613	Golden flower (tetraploid) 1	0.236
	CNS0095614	Golden flower (tetraploid) 2	0.170
	CNS0095615	Golden flower (tetraploid) 3	0.071
CRA001975	CRR073297	Stem 1	15.341
	CRR073298	Stem 2	14.015
	CRR073299	Stem 3	11.872
	CRR073300	Leaf 1	23.965
	CRR073301	Leaf 2	22.768
	CRR073302	Leaf 3	21.732
	CRR073303	Juvenile bud 1	10.607
	CRR073304	Juvenile bud 2	6.617
	CRR073305	Juvenile bud 3	0.171
	CRR073306	Third green 1	0.172
	CRR073307	Third green 2	1.308
	CRR073308	Third green 3	0.053
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.056
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.063
	CRR073313	Silver flowering 2	0.365
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.112
	CRR073319	Tawny withering 2	0.224
	CRR073320	Tawny withering 3	0.339