Detail information of GWHGAAZE005613


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001274976.18.63155E-93uncharacterized protein LOC102577739 [Solanum tuberosum]
Swissprottr|P46297|RS23_FRAAN8E-9440S ribosomal protein S23
trEMBLtr|V4RTD8|V4RTD8_9ROSI3E-93Uncharacterized protein {ECO:0000313|EMBL:ESR37898.1}
TAIR10AT5G02960.19E-71Ribosomal protein S12/S23 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1072060010721790-
GWHAAZE00000002mRNA1072060010721790-
GWHAAZE00000002exon1072163610721790-
GWHAAZE00000002exon1072142810721554-
GWHAAZE00000002exon1072060010721034-
GWHAAZE00000002five_prime_UTR1072177910721790-
GWHAAZE00000002CDS1072163610721778-
GWHAAZE00000002CDS1072142810721554-
GWHAAZE00000002CDS1072089410721034-
GWHAAZE00000002three_prime_UTR1072060010720893-
Transcript Sequence

Network for GWHGAAZE005613

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00164.26Ribosom_S12_S23251355.90E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02973RP-S23e, RPS23 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf269.970
SRR3591706second leaf161.628
SRR3591707mature leaf92.071
SRR3591708Shoot apex402.456
SRR3591709Stem171.995
SRR3591710White floral bud211.942
SRR3591711White flower263.147
SRR3591712Green floral bud296.342
SRR3591713Yellow flower185.845
SRP173429 SRR8316895Juvenile bud stage 148.679
SRR8316896Juvenile bud stage 184.572
SRR8316897Juvenile bud stage 97.277
SRR8316894Third green stage 70.388
SRR8316900Third green stage 229.317
SRR8316901Third green stage 213.880
SRR8316898Complete white stage 53.769
SRR8316899Complete white stage 223.756
SRR8316903Complete white stage 93.872
SRR8316902Silver flowering stage64.600
SRR8316904Silver flowering stage63.146
SRR8316905Silver flowering stage34.469
SRR8316906Gold flowering stage 90.703
SRR8316907Gold flowering stage 96.080
SRR8316908Gold flowering stage 112.857
SRP132670SRR6706286Control242.522
SRR6706287Light intensity 50%247.210
SRR6706288Light intensity 20%258.790
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1316.054
CNS0095593Slightly white alabastrum(diploid) 2375.399
CNS0095594Slightly white alabastrum(diploid) 3287.298
CNS0095595Whole white alabastrum(diploid) 2248.067
CNS0095596Whole white alabastrum(diploid) 3275.897
CNS0095597Whole white alabastrum(diploid) 4189.761
CNS0095598Silvery flower (diploied) 1194.573
CNS0095599Silvery flower (diploied) 2177.229
CNS0095600Silvery flower (diploied) 3145.792
CNS0095601Golden flower (diploid) 1170.353
CNS0095602Golden flower (diploid) 2126.162
CNS0095603Golden flower (diploid) 3125.737
CNS0095604Slightly white alabastrum(tetraploid) 1234.416
CNS0095605Slightly white alabastrum(tetraploid) 2251.571
CNS0095606Slightly white alabastrum(tetraploid) 3322.517
CNS0095607Whole white alabastrum(tetraploid) 1142.036
CNS0095608Whole white alabastrum(tetraploid) 2127.986
CNS0095609Whole white alabastrum(tetraploid) 3208.000
CNS0095610Silvery flower (tetraploid) 1155.874
CNS0095611Silvery flower (tetraploid) 2124.908
CNS0095612Silvery flower (tetraploid) 385.709
CNS0095613Golden flower (tetraploid) 198.792
CNS0095614Golden flower (tetraploid) 2122.196
CNS0095615Golden flower (tetraploid) 366.983
CRA001975CRR073297Stem 1203.197
CRR073298Stem 2214.622
CRR073299Stem 3234.665
CRR073300Leaf 1191.722
CRR073301Leaf 2196.906
CRR073302Leaf 3245.157
CRR073303Juvenile bud 1206.370
CRR073304Juvenile bud 2134.798
CRR073305Juvenile bud 3155.475
CRR073306Third green 135.630
CRR073307Third green 239.166
CRR073308Third green 335.798
CRR073309Second white 142.416
CRR073310Second white 234.652
CRR073311Second white 326.659
CRR073312Silver flowering 134.306
CRR073313Silver flowering 242.182
CRR073314Silver flowering 327.292
CRR073315Gold flowering 1115.634
CRR073316Gold flowering 2100.780
CRR073317Gold flowering 3102.030
CRR073318Tawny withering 1201.802
CRR073319Tawny withering 2190.870
CRR073320Tawny withering 3208.170