Gene detail

Detail information of GWHGAAZE005614

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275005.1	2.7099E-108	PREDICTED: uncharacterized protein LOC100258470 isoform X4 [Vitis vinifera]
trEMBL	tr\|A0A067JYV4\|A0A067JYV4_JATCU	2E-108	Uncharacterized protein {ECO:0000313\|EMBL:KDP29077.1}
TAIR10	AT2G43190.3	1E-59	ribonuclease P family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10729269	10733906	+
GWHAAZE00000002	mRNA	10729269	10733906	+
GWHAAZE00000002	exon	10729269	10729623	+
GWHAAZE00000002	exon	10730838	10731091	+
GWHAAZE00000002	exon	10731933	10732009	+
GWHAAZE00000002	exon	10732128	10732393	+
GWHAAZE00000002	exon	10732978	10733046	+
GWHAAZE00000002	exon	10733174	10733232	+
GWHAAZE00000002	exon	10733501	10733602	+
GWHAAZE00000002	exon	10733848	10733906	+
GWHAAZE00000002	five_prime_UTR	10729269	10729623	+
GWHAAZE00000002	five_prime_UTR	10730838	10730871	+
GWHAAZE00000002	CDS	10730872	10731091	+
GWHAAZE00000002	CDS	10731933	10732009	+
GWHAAZE00000002	CDS	10732128	10732393	+
GWHAAZE00000002	CDS	10732978	10733046	+
GWHAAZE00000002	CDS	10733174	10733232	+
GWHAAZE00000002	CDS	10733501	10733602	+
GWHAAZE00000002	CDS	10733848	10733906	+

Transcript Sequence
>GWHTAAZE005622 AGGGAGAATGTTGCGAAAATAAATAAATTGTGCGCCCCTAGAAATCGGGCCGAGTACCACCCACTCCGGCCCTCATAACATACATATATCCTCCGTCCGTCTCACCTGTATCAGTTAACGCGGCAAACTCCACAAACTCATACCATCGTTTTCTCGCTTGCATCCGCCGCTCACGGCGGTACCTACTTCACCATCGCGCACCAATCTCTCTCTATACCCCTCCATCGCACATATCTCCGGTAGTGAACCTACAGTGAACGTTGTCTCTTCTCGATCGCCGCCACCACACGCCTACCGCTGCCATCATCGCCGGCCCAACCTCAGACTTTGGCTGCACCTCTTCTGCGATAACCGGTTACAAGGAGATAAACTGTAATATTTTTGGTGCTATGACGACTGATACAATGGTTCAAGATCAAAAGAAACGCACTTTGGATGCATTAGAGAGAAGGTTTGCTCTAGCTGAAGCTGAGGTTCGTCAACAACAACAGAAGAACAAGAAGAGACCTTACAAAGAGTGGGATAGAACCAAACATGATGTTAATCCTCCTTCTGTACATCCTGCACGTGCATCCGTCATGCCCTCTTCTAATACCTCAGTCATGAATGATCCGGAAGCAAATGATCCAGCATATTATTTACTTTCACATCCTGTACATGAGAATCTCACTTCATCCCATGTTAAGATCTCTAATAAAAGAGGAAGCATAGTCGATCATATCTTGCATGAGCTTCTTCAAAAGGGTGATTCAGCCCAGAAATACATGCAGGGATTACGAAGTATGAAAATTGACCATTCAATCCTTCTTGATAATTTAGTGCAAGGCCATGGCATGTCTGGTGGTTCTCGTACCAGGGCTTTACAGAGCCACTCAAAGCGATCTAAAAGGCACATGTCCATAAAACAACTTAAAAAATGTGACTTGTTCAATTTGCCTCAAGAGCTCCATAATTATGAAATGTTCAAGCCCATGCATGAAATGTGGAAACACTATATTATGCAACATCTCAAAAATATGGGGAAAAATCAGTTGGCCCGATGTCTCCTCAGTGCAGACCTACATGGTGCAATTATTCTAGTTGCAGAGTGTAAAGCAGCTGGCTTCGCTGGAGTTAGTGGTATCATGATTCGTGAAACTGCGGAAACATTTGGTATAATTGCCCAAGATAATAAATTTCGAGTTTCTATTCTAGTGATGCTGACGGCGTTGGCTTTTAGCTTGACTTGGGTTGTTCATTGA

Network for GWHGAAZE005614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01868.17	UPF0086	219	264	3.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03538	POP4, RPP29	RNA transport	map03013
K03538	POP4, RPP29	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing
GO:0006396	biological_process	RNA processing
GO:0030677	cellular_component	ribonuclease P complex
GO:0003723	molecular_function	RNA binding
GO:0004540	molecular_function	ribonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.273
	SRR3591706	second leaf	12.542
	SRR3591707	mature leaf	9.216
	SRR3591708	Shoot apex	19.096
	SRR3591709	Stem	14.952
	SRR3591710	White floral bud	11.348
	SRR3591711	White flower	10.652
	SRR3591712	Green floral bud	17.815
	SRR3591713	Yellow flower	7.057
SRP173429	SRR8316895	Juvenile bud stage	12.320
	SRR8316896	Juvenile bud stage	15.653
	SRR8316897	Juvenile bud stage	8.759
	SRR8316894	Third green stage	6.576
	SRR8316900	Third green stage	15.098
	SRR8316901	Third green stage	15.118
	SRR8316898	Complete white stage	7.502
	SRR8316899	Complete white stage	22.512
	SRR8316903	Complete white stage	12.082
	SRR8316902	Silver flowering stage	9.014
	SRR8316904	Silver flowering stage	14.194
	SRR8316905	Silver flowering stage	6.247
	SRR8316906	Gold flowering stage	18.821
	SRR8316907	Gold flowering stage	19.285
	SRR8316908	Gold flowering stage	22.260
SRP132670	SRR6706286	Control	17.938
	SRR6706287	Light intensity 50%	17.300
	SRR6706288	Light intensity 20%	17.715
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.151
	CNS0095593	Slightly white alabastrum(diploid) 2	10.938
	CNS0095594	Slightly white alabastrum(diploid) 3	10.592
	CNS0095595	Whole white alabastrum(diploid) 2	10.919
	CNS0095596	Whole white alabastrum(diploid) 3	9.855
	CNS0095597	Whole white alabastrum(diploid) 4	11.111
	CNS0095598	Silvery flower (diploied) 1	11.862
	CNS0095599	Silvery flower (diploied) 2	11.194
	CNS0095600	Silvery flower (diploied) 3	15.694
	CNS0095601	Golden flower (diploid) 1	10.659
	CNS0095602	Golden flower (diploid) 2	13.005
	CNS0095603	Golden flower (diploid) 3	12.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.038
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.434
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.194
	CNS0095610	Silvery flower (tetraploid) 1	17.485
	CNS0095611	Silvery flower (tetraploid) 2	15.774
	CNS0095612	Silvery flower (tetraploid) 3	19.162
	CNS0095613	Golden flower (tetraploid) 1	12.061
	CNS0095614	Golden flower (tetraploid) 2	14.566
	CNS0095615	Golden flower (tetraploid) 3	14.546
CRA001975	CRR073297	Stem 1	13.911
	CRR073298	Stem 2	11.821
	CRR073299	Stem 3	7.625
	CRR073300	Leaf 1	9.558
	CRR073301	Leaf 2	11.940
	CRR073302	Leaf 3	6.856
	CRR073303	Juvenile bud 1	7.662
	CRR073304	Juvenile bud 2	8.004
	CRR073305	Juvenile bud 3	11.031
	CRR073306	Third green 1	5.872
	CRR073307	Third green 2	5.824
	CRR073308	Third green 3	5.809
	CRR073309	Second white 1	8.888
	CRR073310	Second white 2	8.719
	CRR073311	Second white 3	8.438
	CRR073312	Silver flowering 1	6.644
	CRR073313	Silver flowering 2	7.273
	CRR073314	Silver flowering 3	5.685
	CRR073315	Gold flowering 1	5.744
	CRR073316	Gold flowering 2	6.307
	CRR073317	Gold flowering 3	3.059
	CRR073318	Tawny withering 1	9.435
	CRR073319	Tawny withering 2	10.197
	CRR073320	Tawny withering 3	9.780