Detail information of GWHGAAZE005627


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280200.10PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Vitis vinifera]
Swissprottr|O49500|MBR2_ARATH5E-38E3 ubiquitin-protein ligase MBR2
trEMBLtr|D7TQJ0|D7TQJ0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32710.3}
TAIR10AT4G34040.12E-35RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1102270911026513-
GWHAAZE00000002mRNA1102270911026513-
GWHAAZE00000002exon1102645311026513-
GWHAAZE00000002exon1102470611025805-
GWHAAZE00000002exon1102371111023809-
GWHAAZE00000002exon1102349211023629-
GWHAAZE00000002exon1102270911022861-
GWHAAZE00000002CDS1102645311026513-
GWHAAZE00000002CDS1102470611025805-
GWHAAZE00000002CDS1102371111023809-
GWHAAZE00000002CDS1102349211023629-
GWHAAZE00000002CDS1102270911022861-
Transcript Sequence

Network for GWHGAAZE005627

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_24615042.00E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf68.982
SRR3591706second leaf26.616
SRR3591707mature leaf43.885
SRR3591708Shoot apex39.624
SRR3591709Stem102.948
SRR3591710White floral bud95.018
SRR3591711White flower109.932
SRR3591712Green floral bud61.594
SRR3591713Yellow flower127.035
SRP173429 SRR8316895Juvenile bud stage 44.811
SRR8316896Juvenile bud stage 57.712
SRR8316897Juvenile bud stage 30.353
SRR8316894Third green stage 24.835
SRR8316900Third green stage 59.935
SRR8316901Third green stage 64.288
SRR8316898Complete white stage 45.421
SRR8316899Complete white stage 101.323
SRR8316903Complete white stage 86.071
SRR8316902Silver flowering stage48.351
SRR8316904Silver flowering stage67.498
SRR8316905Silver flowering stage31.301
SRR8316906Gold flowering stage 105.571
SRR8316907Gold flowering stage 104.398
SRR8316908Gold flowering stage 116.553
SRP132670SRR6706286Control57.427
SRR6706287Light intensity 50%60.802
SRR6706288Light intensity 20%57.088
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.056
CNS0095593Slightly white alabastrum(diploid) 253.890
CNS0095594Slightly white alabastrum(diploid) 343.259
CNS0095595Whole white alabastrum(diploid) 243.294
CNS0095596Whole white alabastrum(diploid) 338.149
CNS0095597Whole white alabastrum(diploid) 448.926
CNS0095598Silvery flower (diploied) 1104.924
CNS0095599Silvery flower (diploied) 280.895
CNS0095600Silvery flower (diploied) 392.195
CNS0095601Golden flower (diploid) 197.495
CNS0095602Golden flower (diploid) 2103.766
CNS0095603Golden flower (diploid) 3106.495
CNS0095604Slightly white alabastrum(tetraploid) 162.091
CNS0095605Slightly white alabastrum(tetraploid) 251.377
CNS0095606Slightly white alabastrum(tetraploid) 382.385
CNS0095607Whole white alabastrum(tetraploid) 157.669
CNS0095608Whole white alabastrum(tetraploid) 242.427
CNS0095609Whole white alabastrum(tetraploid) 358.817
CNS0095610Silvery flower (tetraploid) 1162.676
CNS0095611Silvery flower (tetraploid) 2115.814
CNS0095612Silvery flower (tetraploid) 3144.566
CNS0095613Golden flower (tetraploid) 1151.735
CNS0095614Golden flower (tetraploid) 2147.775
CNS0095615Golden flower (tetraploid) 3149.516
CRA001975CRR073297Stem 170.172
CRR073298Stem 258.819
CRR073299Stem 333.996
CRR073300Leaf 174.921
CRR073301Leaf 269.083
CRR073302Leaf 331.023
CRR073303Juvenile bud 131.059
CRR073304Juvenile bud 225.830
CRR073305Juvenile bud 344.316
CRR073306Third green 119.546
CRR073307Third green 215.275
CRR073308Third green 320.594
CRR073309Second white 126.699
CRR073310Second white 233.154
CRR073311Second white 327.517
CRR073312Silver flowering 128.251
CRR073313Silver flowering 228.069
CRR073314Silver flowering 325.860
CRR073315Gold flowering 118.539
CRR073316Gold flowering 232.383
CRR073317Gold flowering 318.057
CRR073318Tawny withering 145.374
CRR073319Tawny withering 242.937
CRR073320Tawny withering 337.289