Gene detail

Detail information of GWHGAAZE005628

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027296.1	1.9398E-127	NAC domain protein, IPR003441, putative [Theobroma cacao]
Swissprot	tr\|O49255\|NAC29_ARATH	2E-78	NAC transcription factor 29
trEMBL	tr\|A0A061ET24\|A0A061ET24_THECC	7E-128	NAC domain protein, IPR003441, putative {ECO:0000313\|EMBL:EOY07798.1}
TAIR10	AT1G61110.1	4E-65	NAC domain containing protein 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11049810	11051129	-
GWHAAZE00000002	mRNA	11049810	11051129	-
GWHAAZE00000002	exon	11050952	11051129	-
GWHAAZE00000002	exon	11050566	11050852	-
GWHAAZE00000002	exon	11049810	11050451	-
GWHAAZE00000002	CDS	11050952	11051129	-
GWHAAZE00000002	CDS	11050566	11050852	-
GWHAAZE00000002	CDS	11049894	11050451	-
GWHAAZE00000002	three_prime_UTR	11049810	11049893	-

Transcript Sequence
>GWHTAAZE005636 ATGGAGAGAGAGTCTGATCCTAATCCAAATATTCATCTTCCTCCAGGTTTTAGATTCCATCCATCCGATGAGGAGCTCATCGTTCACTATCTGAAAAACAAAGCAACTTCAAATCCGCTCCCAGCATCTATTATTGCCGAAGTTGAACTTTACAAGTTAGACCCCTGGGAGCTACCAAAGAAAGCTTTATTTGGAGGGGAGGAATGGTATTTCTTTACTCCAAGAGAGAGAAAGTATCCGAACGGACTGAGGCCTAATAGAATGGCAGCTTCTGGATATTGGAAAGCCACAGGAACTGATAAACCCATTTTCAGTTCATACGGAGCAAAGATTATTGGGGTTAAGAAAGCTCTAGTTTTCTACAAGGGACGTCCTCCTAGAGGGGTTAAGACAGACTGGATCATGGATGAGTACAGATTGCTTGAAACAATGGTGTGGACTTCAAAGAAAAAAGGGTCGATGCGGTTGGATGATTGGGTACTCTGCCGAGTTAGGCAGAAAGGCAGCAACGTCTTGAGTAATGTGACAGAAGATCACTACAGTCTGAGAAACGAACCAGTTGAACACTTTCCCAGTATGAATACAAACCCTAATAATCTAGAAATGCTCAGTGATTCTCTATTCAAATCCTGCCCGATGTTGCCTTTTATTACTGGCTCGGAATTAAATTTCCCTGGCATGGATACACTTTCTAGTATAAGCTCTGAAAGTAACAGAACGACAAATTTAGCCTTCGAGGACTCGTTAGCTGGTGAGAATTGGCAAGTTTTGGTTCCCTCGTTGAACAGTATGTTAAATACACCAAAGAGAAAACATGTTGAAAGGAGTCAGCAAGAGAGTTTCATTCAACCCAACAAGAAGCTTACTAACAGAGATGATCTAAAGGAGGACGTATTATCTCTGAGAAACGACAATATTGACATGAATTTCTACCCCACATACCAGCCAGAAAGCAACAATTTAAGTGCTGAATGGAAGCCTATGGTGCAATACAAAGAGCTTAACTACACGGCCTTCGCCTGAGGTGACTGAAGTTTGCTTGTGTGGTGTGTGGTGTGTGTATATACATATATATATACATAATCTAGGAAGTCTTCTGCAAGTGAA

Network for GWHGAAZE005628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	14	140	2.50E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.535
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.120
	SRR3591708	Shoot apex	0.105
	SRR3591709	Stem	0.347
	SRR3591710	White floral bud	0.454
	SRR3591711	White flower	0.692
	SRR3591712	Green floral bud	0.721
	SRR3591713	Yellow flower	0.200
SRP173429	SRR8316895	Juvenile bud stage	1.016
	SRR8316896	Juvenile bud stage	0.233
	SRR8316897	Juvenile bud stage	0.490
	SRR8316894	Third green stage	0.474
	SRR8316900	Third green stage	0.386
	SRR8316901	Third green stage	0.483
	SRR8316898	Complete white stage	1.446
	SRR8316899	Complete white stage	2.685
	SRR8316903	Complete white stage	1.147
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.062
	SRR8316905	Silver flowering stage	0.026
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.101
SRP132670	SRR6706286	Control	0.246
	SRR6706287	Light intensity 50%	0.263
	SRR6706288	Light intensity 20%	0.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.848
	CNS0095593	Slightly white alabastrum(diploid) 2	0.652
	CNS0095594	Slightly white alabastrum(diploid) 3	1.382
	CNS0095595	Whole white alabastrum(diploid) 2	0.371
	CNS0095596	Whole white alabastrum(diploid) 3	0.225
	CNS0095597	Whole white alabastrum(diploid) 4	0.299
	CNS0095598	Silvery flower (diploied) 1	0.191
	CNS0095599	Silvery flower (diploied) 2	0.092
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.196
	CNS0095602	Golden flower (diploid) 2	0.005
	CNS0095603	Golden flower (diploid) 3	0.055
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.827
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.522
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.448
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.380
	CNS0095610	Silvery flower (tetraploid) 1	0.289
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.203
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.657
	CRR073298	Stem 2	1.564
	CRR073299	Stem 3	1.338
	CRR073300	Leaf 1	0.659
	CRR073301	Leaf 2	0.660
	CRR073302	Leaf 3	0.522
	CRR073303	Juvenile bud 1	0.276
	CRR073304	Juvenile bud 2	0.800
	CRR073305	Juvenile bud 3	0.820
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.269
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000