Detail information of GWHGAAZE005633


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280929.20PREDICTED: uncharacterized protein LOC100265508 isoform X2 [Vitis vinifera]
Swissprottr|F4JKK0|SUD1_ARATH0.000002Probable E3 ubiquitin ligase SUD1
trEMBLtr|D7TQK4|D7TQK4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32724.3}
TAIR10AT3G09760.12E-124RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1111457911118601-
GWHAAZE00000002mRNA1111457911118601-
GWHAAZE00000002exon1111457911114818-
GWHAAZE00000002exon1111524911115328-
GWHAAZE00000002exon1111542911115519-
GWHAAZE00000002exon1111559011115700-
GWHAAZE00000002exon1111641211116707-
GWHAAZE00000002exon1111689411117068-
GWHAAZE00000002exon1111739211117889-
GWHAAZE00000002exon1111852711118601-
GWHAAZE00000002CDS1111852711118601-
GWHAAZE00000002CDS1111739211117889-
GWHAAZE00000002CDS1111689411117068-
GWHAAZE00000002CDS1111641211116707-
GWHAAZE00000002CDS1111559011115700-
GWHAAZE00000002CDS1111542911115519-
GWHAAZE00000002CDS1111524911115328-
GWHAAZE00000002CDS1111457911114818-
Transcript Sequence

Network for GWHGAAZE005633

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.8RINGv2673141.00E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.511
SRR3591706second leaf6.762
SRR3591707mature leaf9.448
SRR3591708Shoot apex18.074
SRR3591709Stem10.196
SRR3591710White floral bud10.233
SRR3591711White flower12.788
SRR3591712Green floral bud19.254
SRR3591713Yellow flower9.987
SRP173429 SRR8316895Juvenile bud stage 8.955
SRR8316896Juvenile bud stage 8.999
SRR8316897Juvenile bud stage 4.520
SRR8316894Third green stage 6.219
SRR8316900Third green stage 23.789
SRR8316901Third green stage 22.847
SRR8316898Complete white stage 3.771
SRR8316899Complete white stage 43.065
SRR8316903Complete white stage 8.484
SRR8316902Silver flowering stage7.259
SRR8316904Silver flowering stage9.121
SRR8316905Silver flowering stage3.839
SRR8316906Gold flowering stage 12.453
SRR8316907Gold flowering stage 10.288
SRR8316908Gold flowering stage 13.168
SRP132670SRR6706286Control24.009
SRR6706287Light intensity 50%22.868
SRR6706288Light intensity 20%26.135
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.363
CNS0095593Slightly white alabastrum(diploid) 215.890
CNS0095594Slightly white alabastrum(diploid) 310.464
CNS0095595Whole white alabastrum(diploid) 212.303
CNS0095596Whole white alabastrum(diploid) 312.974
CNS0095597Whole white alabastrum(diploid) 413.079
CNS0095598Silvery flower (diploied) 115.727
CNS0095599Silvery flower (diploied) 210.946
CNS0095600Silvery flower (diploied) 312.000
CNS0095601Golden flower (diploid) 110.176
CNS0095602Golden flower (diploid) 210.824
CNS0095603Golden flower (diploid) 310.894
CNS0095604Slightly white alabastrum(tetraploid) 117.581
CNS0095605Slightly white alabastrum(tetraploid) 215.469
CNS0095606Slightly white alabastrum(tetraploid) 332.401
CNS0095607Whole white alabastrum(tetraploid) 111.393
CNS0095608Whole white alabastrum(tetraploid) 211.138
CNS0095609Whole white alabastrum(tetraploid) 321.582
CNS0095610Silvery flower (tetraploid) 120.775
CNS0095611Silvery flower (tetraploid) 222.140
CNS0095612Silvery flower (tetraploid) 314.023
CNS0095613Golden flower (tetraploid) 112.507
CNS0095614Golden flower (tetraploid) 217.275
CNS0095615Golden flower (tetraploid) 310.895
CRA001975CRR073297Stem 122.132
CRR073298Stem 218.153
CRR073299Stem 317.150
CRR073300Leaf 129.958
CRR073301Leaf 229.209
CRR073302Leaf 325.404
CRR073303Juvenile bud 129.302
CRR073304Juvenile bud 216.835
CRR073305Juvenile bud 335.288
CRR073306Third green 11.336
CRR073307Third green 22.201
CRR073308Third green 32.174
CRR073309Second white 14.209
CRR073310Second white 25.620
CRR073311Second white 35.844
CRR073312Silver flowering 14.849
CRR073313Silver flowering 23.240
CRR073314Silver flowering 33.769
CRR073315Gold flowering 19.449
CRR073316Gold flowering 216.029
CRR073317Gold flowering 36.020
CRR073318Tawny withering 110.756
CRR073319Tawny withering 211.530
CRR073320Tawny withering 311.904