Detail information of GWHGAAZE005635


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006428784.12.7546E-111hypothetical protein CICLE_v10012805mg [Citrus clementina]
Swissprottr|O50003|RL12_PRUAR6E-10960S ribosomal protein L12
trEMBLtr|V4UR62|V4UR62_9ROSI1E-111Uncharacterized protein {ECO:0000313|EMBL:ESR42024.1}
TAIR10AT5G60670.12E-82Ribosomal protein L11 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1116503411165534-
GWHAAZE00000002mRNA1116503411165534-
GWHAAZE00000002exon1116503411165534-
GWHAAZE00000002CDS1116503411165534-
Transcript Sequence

Network for GWHGAAZE005635

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03946.15Ribosomal_L11_N10703.40E-20
PF00298.20Ribosomal_L11751445.90E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02870RP-L12e, RPL12 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf124.794
SRR3591706second leaf77.248
SRR3591707mature leaf34.360
SRR3591708Shoot apex160.168
SRR3591709Stem63.932
SRR3591710White floral bud74.871
SRR3591711White flower92.688
SRR3591712Green floral bud182.631
SRR3591713Yellow flower56.566
SRP173429 SRR8316895Juvenile bud stage 96.209
SRR8316896Juvenile bud stage 144.785
SRR8316897Juvenile bud stage 61.404
SRR8316894Third green stage 54.915
SRR8316900Third green stage 183.962
SRR8316901Third green stage 201.782
SRR8316898Complete white stage 29.312
SRR8316899Complete white stage 160.352
SRR8316903Complete white stage 35.149
SRR8316902Silver flowering stage21.504
SRR8316904Silver flowering stage21.267
SRR8316905Silver flowering stage10.269
SRR8316906Gold flowering stage 27.890
SRR8316907Gold flowering stage 32.256
SRR8316908Gold flowering stage 39.111
SRP132670SRR6706286Control203.282
SRR6706287Light intensity 50%197.603
SRR6706288Light intensity 20%222.261
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1186.078
CNS0095593Slightly white alabastrum(diploid) 2208.436
CNS0095594Slightly white alabastrum(diploid) 3182.036
CNS0095595Whole white alabastrum(diploid) 2171.739
CNS0095596Whole white alabastrum(diploid) 3205.702
CNS0095597Whole white alabastrum(diploid) 4148.672
CNS0095598Silvery flower (diploied) 165.381
CNS0095599Silvery flower (diploied) 260.110
CNS0095600Silvery flower (diploied) 357.135
CNS0095601Golden flower (diploid) 158.253
CNS0095602Golden flower (diploid) 251.870
CNS0095603Golden flower (diploid) 351.410
CNS0095604Slightly white alabastrum(tetraploid) 1198.078
CNS0095605Slightly white alabastrum(tetraploid) 2209.236
CNS0095606Slightly white alabastrum(tetraploid) 3202.574
CNS0095607Whole white alabastrum(tetraploid) 1137.799
CNS0095608Whole white alabastrum(tetraploid) 2117.313
CNS0095609Whole white alabastrum(tetraploid) 3190.613
CNS0095610Silvery flower (tetraploid) 154.319
CNS0095611Silvery flower (tetraploid) 246.992
CNS0095612Silvery flower (tetraploid) 329.069
CNS0095613Golden flower (tetraploid) 122.647
CNS0095614Golden flower (tetraploid) 244.286
CNS0095615Golden flower (tetraploid) 322.484
CRA001975CRR073297Stem 1182.712
CRR073298Stem 2188.806
CRR073299Stem 3265.916
CRR073300Leaf 1214.230
CRR073301Leaf 2213.223
CRR073302Leaf 3344.796
CRR073303Juvenile bud 1246.670
CRR073304Juvenile bud 2230.813
CRR073305Juvenile bud 3231.064
CRR073306Third green 126.012
CRR073307Third green 229.863
CRR073308Third green 325.088
CRR073309Second white 126.750
CRR073310Second white 216.560
CRR073311Second white 39.840
CRR073312Silver flowering 119.976
CRR073313Silver flowering 231.594
CRR073314Silver flowering 320.912
CRR073315Gold flowering 179.817
CRR073316Gold flowering 284.978
CRR073317Gold flowering 3104.774
CRR073318Tawny withering 1189.976
CRR073319Tawny withering 2154.905
CRR073320Tawny withering 3195.284