Gene detail

Detail information of GWHGAAZE005646

Functional Annotation

Database	Orthologs	Annotation
Nr	AGE10589.1	phenylalanine amononia-lyase [Lonicera japonica]
Swissprot	tr\|P45726\|PALY_CAMSI	Phenylalanine ammonia-lyase
trEMBL	tr\|L7Z3F2\|L7Z3F2_LONJA	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}
TAIR10	AT2G37040.1	PHE ammonia lyase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11412702	11415855	+
GWHAAZE00000002	mRNA	11412702	11415855	+
GWHAAZE00000002	exon	11412702	11413096	+
GWHAAZE00000002	exon	11414106	11415855	+
GWHAAZE00000002	CDS	11412702	11413096	+
GWHAAZE00000002	CDS	11414106	11415855	+

Transcript Sequence
>GWHTAAZE005654 ATGGAGAATGGACACAGAAATGGCGGGGTCGTTTCGGAATTGTGCGTGAAGGATCCGTTGAATTGGGGAGTGGCGGCCGAGGGAATGAAGGGGAGCCATTTGGAGGAGGTGAAGAGGATGGTGGCTGAGTTTAGGAATCCGGTGGTGAAGCTCGGCGGCGAGGGGCTCACGATTTCTCAGGTGGCGGCTATAGCTTCTGCAGGAGGAGGTGAGACTAGTGCAGGGGTGAAGGTGGAGCTGTGGGAGGGGGCGAGGGAGAGAGTGAAGGCGAGTAGCGATTGGGTGATGGAGAGTATGAATAAAGGGACGGACAGTTACGGTGTTACTACTGGTTTTGGTGCTACTTCTCATCGGAGGACTAAACAAGGCGGTGCTCTTCAAAAGGAGCTTATTAGGTTCTTGAATTCCGGAATATTTGGCAATGGAACAGAATCATCCCACACACTACCACACTCAGCAACTAGAGCAGCCATGTTAGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCCGTTTCGAAATCCTCGAAGCCATCACGAAATTCCTCAACCACAATGTCACTCCGTGTTTGCCCCTACGTGGCACAATCACGGCCTCCGGAGATCTTGTCCCCTTATCCTACATTGCTGGACTTCTCACTGGCCGCCCCAATTCCAAGGCAGTCGGACCCGCCGGAGAAATCCTCACTGCCGAAGCTGCCTTTGGCCTTGCCGGAGTCACTGGCGGATTTTTCGAGCTCCAACCCAAGGAAGGCCTTGCACTTGTTAATGGCACAGCTGTTGGCTCTGGCATGGCCTCTATGGTTCTTTTTGAGGCCAACATTCTTGCCCTTTTATCTGAAGTCTTATCAGCTATCTTTGCTGAAGTTATGCAAGGAAAGCCCGAATTTACCGACCATTTGACGCACAAATTAAAGCACCACCCGGGCCAGATTGAGGCTGCAGCAATAATGGAGCACATTTTAGATGGAAGCTCCTATGTCAAGGCTGCTGAAAAACTTCACGAGATGGACCCCTTGCAAAAGCCCAAACAAGATCGCTACGCCCTCCGAACATCACCCCAGTGGCTCGGCCCTCAAATTGAGGTGATCCGATCATCGACGAAGATGATTGAGAGGGAGATAAACTCAGTGAATGACAACCCGTTGATCGATGTTTCGAGGAACAAGGCCTTACATGGTGGCAACTTTCAAGGCACCCCAATTGGAGTCTCTATGGATAACACCAGATTAGCCATTGCCGCAATTGGAAAACTCATGTTTGCCCAATTTTCGGAGCTTGTGAATGATTTTTACAACAATGGTTTGCCTTCTAATCTCTCCGGTGGACGTAATCCAAGCTTGGACTATGGCTTCAAAGGCGCCGAGATCGCCATGGCTTCATATTGTTCTGAACTTCAATTTTTGGCCAATCCAGTCACTAACCACGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAACTCATTGGGCTTAATCTCTTCTCGAAAGACAGCCGAGGCCGTTGATATCTTGAAGCTAATGTCATCTACATATCTGGTAGGTCTATGCCAGGCCATAGACTTGAGGCATTTGGAGGAGAATTTACGGACCACAGTAAAGAACACCGTGAGCCTAGTGGCTAAGCGGGTCTTGACCATGGGTGCCAACGGTGAACTCCACCCCTCAAGGTTCTGCGAGAAGGATCTGCTTAGAGTGGTGGACCGTGAGTACGTGTTTGCCTACATTGATGACCCCTGCAGTGCTACCTACCCGTTAATGGAAAAACTAAGGCAAGTTCTGGTTGAACACGCATTGAAAAACGAAGTTAGTGAGAAGAATGTGAGCACTTCCATCTTCCAAAAGATCGGAGCTTTCGAGGAAGAATTGAAAGCCCTTTTGCCGAAAGAGGTGGAGAGTACACGCGCTTTGATTGAGAGTGGGAATGGTGGAATTGCTAACCGGATAAAGGATTGTCGGTCTTACCCATTGTACAAGTTTGTGAGGGAAGAGCTTGGAACAGAGTTGCTGACTGGAGAGAAGGTCCGGTCACCAGGGGAGGAGTTTGATAAAGTGTTCACGGCAATGTGTGAGGGAAAGATAATTGATCCATTGTTGGATTGTCTCACGAGTTGGAATGGTAGTCCTCTACCAATCTGTTAG

Network for GWHGAAZE005646

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00221.20	Lyase_aromatic	56	533	3.50E-152

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10775	PAL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylalanine metabolism	map00360
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006559	biological_process	L-phenylalanine catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0016841	molecular_function	ammonia-lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	175.883
	SRR3591706	second leaf	157.531
	SRR3591707	mature leaf	156.678
	SRR3591708	Shoot apex	187.736
	SRR3591709	Stem	319.929
	SRR3591710	White floral bud	156.812
	SRR3591711	White flower	167.569
	SRR3591712	Green floral bud	133.262
	SRR3591713	Yellow flower	122.509
SRP173429	SRR8316895	Juvenile bud stage	206.637
	SRR8316896	Juvenile bud stage	168.470
	SRR8316897	Juvenile bud stage	101.587
	SRR8316894	Third green stage	45.889
	SRR8316900	Third green stage	90.666
	SRR8316901	Third green stage	143.924
	SRR8316898	Complete white stage	17.067
	SRR8316899	Complete white stage	146.506
	SRR8316903	Complete white stage	43.802
	SRR8316902	Silver flowering stage	93.859
	SRR8316904	Silver flowering stage	94.979
	SRR8316905	Silver flowering stage	58.058
	SRR8316906	Gold flowering stage	374.484
	SRR8316907	Gold flowering stage	398.488
	SRR8316908	Gold flowering stage	455.162
SRP132670	SRR6706286	Control	125.369
	SRR6706287	Light intensity 50%	133.312
	SRR6706288	Light intensity 20%	116.755
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	141.038
	CNS0095593	Slightly white alabastrum(diploid) 2	116.484
	CNS0095594	Slightly white alabastrum(diploid) 3	195.286
	CNS0095595	Whole white alabastrum(diploid) 2	120.405
	CNS0095596	Whole white alabastrum(diploid) 3	28.615
	CNS0095597	Whole white alabastrum(diploid) 4	106.815
	CNS0095598	Silvery flower (diploied) 1	241.548
	CNS0095599	Silvery flower (diploied) 2	255.052
	CNS0095600	Silvery flower (diploied) 3	104.607
	CNS0095601	Golden flower (diploid) 1	238.784
	CNS0095602	Golden flower (diploid) 2	197.932
	CNS0095603	Golden flower (diploid) 3	195.779
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.071
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.990
	CNS0095606	Slightly white alabastrum(tetraploid) 3	169.042
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.632
	CNS0095609	Whole white alabastrum(tetraploid) 3	126.079
	CNS0095610	Silvery flower (tetraploid) 1	85.911
	CNS0095611	Silvery flower (tetraploid) 2	40.730
	CNS0095612	Silvery flower (tetraploid) 3	56.476
	CNS0095613	Golden flower (tetraploid) 1	77.544
	CNS0095614	Golden flower (tetraploid) 2	110.242
	CNS0095615	Golden flower (tetraploid) 3	35.872
CRA001975	CRR073297	Stem 1	249.244
	CRR073298	Stem 2	198.203
	CRR073299	Stem 3	216.578
	CRR073300	Leaf 1	150.220
	CRR073301	Leaf 2	181.133
	CRR073302	Leaf 3	163.855
	CRR073303	Juvenile bud 1	114.788
	CRR073304	Juvenile bud 2	115.832
	CRR073305	Juvenile bud 3	137.798
	CRR073306	Third green 1	436.028
	CRR073307	Third green 2	157.643
	CRR073308	Third green 3	265.576
	CRR073309	Second white 1	765.437
	CRR073310	Second white 2	614.771
	CRR073311	Second white 3	728.370
	CRR073312	Silver flowering 1	1176.146
	CRR073313	Silver flowering 2	1064.668
	CRR073314	Silver flowering 3	1061.206
	CRR073315	Gold flowering 1	97.531
	CRR073316	Gold flowering 2	211.330
	CRR073317	Gold flowering 3	213.978
	CRR073318	Tawny withering 1	287.697
	CRR073319	Tawny withering 2	626.770
	CRR073320	Tawny withering 3	239.475