Gene detail

Detail information of GWHGAAZE005647

Functional Annotation

Database	Orthologs	Annotation
Nr	KDO50670.1	hypothetical protein CISIN_1g017413mg [Citrus sinensis]
Swissprot	tr\|Q945K7\|IDH5_ARATH	Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial (Precursor)
trEMBL	tr\|A0A067E9Z4\|A0A067E9Z4_CITSI	Isocitrate dehydrogenase [NAD] subunit, mitochondrial {ECO:0000256\|RuleBase:RU361266}
TAIR10	AT5G03290.1	isocitrate dehydrogenase V

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11441913	11448646	+
GWHAAZE00000002	mRNA	11441913	11448646	+
GWHAAZE00000002	exon	11441913	11442122	+
GWHAAZE00000002	exon	11443617	11443937	+
GWHAAZE00000002	exon	11444025	11444186	+
GWHAAZE00000002	exon	11444263	11444337	+
GWHAAZE00000002	exon	11444558	11444667	+
GWHAAZE00000002	exon	11444789	11444861	+
GWHAAZE00000002	exon	11448455	11448646	+
GWHAAZE00000002	CDS	11441913	11442122	+
GWHAAZE00000002	CDS	11443617	11443937	+
GWHAAZE00000002	CDS	11444025	11444186	+
GWHAAZE00000002	CDS	11444263	11444337	+
GWHAAZE00000002	CDS	11444558	11444667	+
GWHAAZE00000002	CDS	11444789	11444861	+
GWHAAZE00000002	CDS	11448455	11448646	+

Transcript Sequence
>GWHTAAZE005655 ATGGCTTCCCAAATTATGAGACGCTTTCTTCGAAGCCGAGCCACTGAGATCTTCTCGACGAACCCTAGTTTTGCAGCAGCAGCGTCGTCTAGGGTTTTCTCACCCCTCGCTCGGACCTTCTCTTCCACGCCTTCTGGTTCGGATCTGATTACAGCCACTCTCTTCCCCGGCGATGGAATCGGCCCCGAGATCGCTGAATCCGTCAAACAGGTATTCAGAACTGCGGATGTGCCAATCGAATGGGAAGAACACTATGTGGGGCAGGAAATAGATCCTAGAACCCAGAGTTTTCTAACATGGGAAAGTCTGGAATCAGTAAGAAAAAACAAGGTTGGTCTGAAAGGACCAATGGCCACACCGATTGGAAAAGGTCACCGCTCTTTGAACCTTACATTGAGGAAAGAGCTTAATCTATACGCTAATGTTAGGCCTTGCTACAGTCTTCCTGGATACAAGACTCGCTATGATGATGTAGATCTCATTACTATCCGTGAAAATACAGAAGGAGAGTACAGTGGTCTTGAACATCAAGTGGTGAGGGGTGTTGTTGAAAGCCTTAAGATCATCACTCGTCAGGCAAGTCTGAGGGTTGCTGAGTATGCCTTTCACTATGCCAAGGCCCATGGAAGAGAGAGAGTTTCTGCAATACACAAAGCCAATATCATGCAGAAAACTGATGGTCTTTTTCTGAAGTGTTGTCGCGAGGTAGCAGAGAAGTACCCCGAGATAAAATATGAGGAAGTTGTCATTGACAATTGTTGTATGATGCTTGTCAAGAATCCAGCACTCTTTGATGTTCTAGTTATGCCCAATCTTTATGGTGACATTATCAGCGACCTTTGCGCTGGATTGATTGGGGGCTTGGGCTTAACACCAAGCTGCAATATTGGTGAAGGAGGTATTGCTCTTGCTGAGGCAGTTCATGGTTCAGCACCTGATATTGCTGGAAAGAATATGGCAAACCCAACTGCATTGCTATTGAGTTCTGTGTCAATGCTGCGCCATCTGGAGCTTAATGATAAAGCGGATAGAATCCAGGATGCCATCCTTAACACAATTGCAGAAGGGAAGTATAGGACTGCAGACCTTGGTGGCACTTCGTCAACTAGTGATTTTACTAAGGCCATCTGCGATCATCTCTGA

Network for GWHGAAZE005647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0160

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00180.21	Iso_dh	53	376	1.30E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00030	IDH3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004449	molecular_function	isocitrate dehydrogenase (NAD+) activity
GO:0000287	molecular_function	magnesium ion binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	126.990
	SRR3591706	second leaf	58.914
	SRR3591707	mature leaf	50.010
	SRR3591708	Shoot apex	69.587
	SRR3591709	Stem	87.836
	SRR3591710	White floral bud	110.543
	SRR3591711	White flower	130.928
	SRR3591712	Green floral bud	146.328
	SRR3591713	Yellow flower	118.966
SRP173429	SRR8316895	Juvenile bud stage	65.169
	SRR8316896	Juvenile bud stage	115.354
	SRR8316897	Juvenile bud stage	57.658
	SRR8316894	Third green stage	51.808
	SRR8316900	Third green stage	169.586
	SRR8316901	Third green stage	166.003
	SRR8316898	Complete white stage	77.536
	SRR8316899	Complete white stage	138.790
	SRR8316903	Complete white stage	98.343
	SRR8316902	Silver flowering stage	72.335
	SRR8316904	Silver flowering stage	104.563
	SRR8316905	Silver flowering stage	51.690
	SRR8316906	Gold flowering stage	154.389
	SRR8316907	Gold flowering stage	175.088
	SRR8316908	Gold flowering stage	176.768
SRP132670	SRR6706286	Control	138.568
	SRR6706287	Light intensity 50%	144.939
	SRR6706288	Light intensity 20%	155.961
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.170
	CNS0095593	Slightly white alabastrum(diploid) 2	93.037
	CNS0095594	Slightly white alabastrum(diploid) 3	114.103
	CNS0095595	Whole white alabastrum(diploid) 2	102.403
	CNS0095596	Whole white alabastrum(diploid) 3	116.832
	CNS0095597	Whole white alabastrum(diploid) 4	105.100
	CNS0095598	Silvery flower (diploied) 1	57.083
	CNS0095599	Silvery flower (diploied) 2	57.311
	CNS0095600	Silvery flower (diploied) 3	157.083
	CNS0095601	Golden flower (diploid) 1	52.540
	CNS0095602	Golden flower (diploid) 2	120.113
	CNS0095603	Golden flower (diploid) 3	114.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	121.745
	CNS0095605	Slightly white alabastrum(tetraploid) 2	110.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	99.930
	CNS0095607	Whole white alabastrum(tetraploid) 1	115.826
	CNS0095608	Whole white alabastrum(tetraploid) 2	123.076
	CNS0095609	Whole white alabastrum(tetraploid) 3	125.128
	CNS0095610	Silvery flower (tetraploid) 1	142.350
	CNS0095611	Silvery flower (tetraploid) 2	145.956
	CNS0095612	Silvery flower (tetraploid) 3	142.716
	CNS0095613	Golden flower (tetraploid) 1	68.565
	CNS0095614	Golden flower (tetraploid) 2	110.521
	CNS0095615	Golden flower (tetraploid) 3	92.974
CRA001975	CRR073297	Stem 1	113.856
	CRR073298	Stem 2	114.807
	CRR073299	Stem 3	138.790
	CRR073300	Leaf 1	150.842
	CRR073301	Leaf 2	154.476
	CRR073302	Leaf 3	188.409
	CRR073303	Juvenile bud 1	213.599
	CRR073304	Juvenile bud 2	211.423
	CRR073305	Juvenile bud 3	189.197
	CRR073306	Third green 1	183.433
	CRR073307	Third green 2	191.936
	CRR073308	Third green 3	170.433
	CRR073309	Second white 1	273.111
	CRR073310	Second white 2	165.882
	CRR073311	Second white 3	140.989
	CRR073312	Silver flowering 1	176.331
	CRR073313	Silver flowering 2	211.506
	CRR073314	Silver flowering 3	160.713
	CRR073315	Gold flowering 1	77.421
	CRR073316	Gold flowering 2	80.506
	CRR073317	Gold flowering 3	84.770
	CRR073318	Tawny withering 1	129.603
	CRR073319	Tawny withering 2	110.523
	CRR073320	Tawny withering 3	121.862