Gene detail

Detail information of GWHGAAZE005657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094636.1	0	PREDICTED: probable receptor-like protein kinase At5g47070 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9LTC0\|Y5707_ARATH	2E-109	Probable receptor-like protein kinase At5g47070
trEMBL	tr\|M1BY11\|M1BY11_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400055497}
TAIR10	AT3G09830.2	4E-152	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11578840	11580995	+
GWHAAZE00000002	mRNA	11578840	11580995	+
GWHAAZE00000002	exon	11578840	11579190	+
GWHAAZE00000002	exon	11579615	11579875	+
GWHAAZE00000002	exon	11579953	11580075	+
GWHAAZE00000002	exon	11580414	11580995	+
GWHAAZE00000002	CDS	11578840	11579190	+
GWHAAZE00000002	CDS	11579615	11579875	+
GWHAAZE00000002	CDS	11579953	11580075	+
GWHAAZE00000002	CDS	11580414	11580995	+

Transcript Sequence
>GWHTAAZE005665 ATGAAGTGTTTCCACTTCTCAATTGGAGAAAAGAAGGATGAACGAAAGAGCAACAAGTCGATTTCAGCTCAGTCCTTCGACTCTGCACTTACCGATCGTGACGTTAGACGATCTGGGTCTGAACTAAATTCTCGGAATGTCTCGGACGCTAGCACCGAATCCATGGGGAGAACTGGGTTTCCAAGTTTATCTCAACGGCCCAGCAATCTCAGAGTGTTCACCTATGCCGAGTTGAAATCAGTCACAAAGAATTTTAGTCGGTCCACCAAGATTGGAGAAGGCGGGTTTGGATCTGTATATAAGGGTGTGATAAAGAGTTCTGAAAACCATTCTAAAAAGATCGACGTTGCTGGGCACAAGGAATGGGTGACAGAAGTTGATGTTCTCGGGGTGGTTGAGCATCAAAACCTTGTAAAACTAGTGGGCTACTGTGCTGAAGATGATGAAAGAGGAATACAGCGGCTTCTAATTTATGAGTATATGCCTAACAGAAGCGTGGAGGACCATTTATCAATCCGGGCAGAGACTCCTCTCCCCTGGGCCATGAGGCTCAAAGTAGCTCAAGATGCTGCTCGTGGCTTAGCATACTTGCATGAGGAAATGGACTTTCAGATTATCTTCAGAGATTTCAAATCATCAAATATTCTTCTCGATGAGCAATGGAATGCTAAGCTTTCTGACTTTGGGCTGGCAAGGTTGGGCCCTCCAGAAGGACTAACACACGTCTCGACTGCAGTTGTTGGAACCATGGGATATGCAGCACCAGAATACATCCAAACCGGGCGTCTCACATCCAAGAGTGATGTATGGAGCTATGGGGTCTTTCTTTACGAACTTATCACAGGTAGGCGCCCGCTGGATCGAAATCGCCCTAAAAGTGAGCAAAAGCTCCTGGAATGGGTAAAACCGTACTTAGACTCGAAGAAATTTAGGCTAATAATAGACCCAAGGCTTGAAGGGAAATATTCCCTTAAGGAAGCACAAAAACTATCAATTGTAGCCAACCGATGCTTGGCCAGGCACCCAAAGTCACGCCCGAAGATGAGCGAGGTTTTGGAAATGGTGAATCGGGTTTTGGGGGTGCCAACAGCACTAGGCAGCCCTAAGCCACGAGTGAAAGGTTTGGTGCCAATAATAAATCCCAAGGAGATTGCTGACCCGAAAAAACCTTTAGAAACTTCCAAGGATGTTAATGACCAAAAAAAGAATTCCAGGGAAACAAAAAGAAAAGGTAAGAGATGTTTCATGGATATAAAAATTGGAGACGGGGCTTGGCTGGCTCGAATGTGGTCGTCAAAGATTGCGAAAACTTGCTGA

Network for GWHGAAZE005657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0167

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	86	353	5.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.362
	SRR3591706	second leaf	14.104
	SRR3591707	mature leaf	18.213
	SRR3591708	Shoot apex	19.696
	SRR3591709	Stem	37.046
	SRR3591710	White floral bud	34.379
	SRR3591711	White flower	35.768
	SRR3591712	Green floral bud	28.052
	SRR3591713	Yellow flower	27.061
SRP173429	SRR8316895	Juvenile bud stage	43.428
	SRR8316896	Juvenile bud stage	44.402
	SRR8316897	Juvenile bud stage	34.250
	SRR8316894	Third green stage	9.972
	SRR8316900	Third green stage	25.096
	SRR8316901	Third green stage	37.438
	SRR8316898	Complete white stage	8.525
	SRR8316899	Complete white stage	69.990
	SRR8316903	Complete white stage	12.939
	SRR8316902	Silver flowering stage	10.501
	SRR8316904	Silver flowering stage	16.851
	SRR8316905	Silver flowering stage	8.069
	SRR8316906	Gold flowering stage	30.528
	SRR8316907	Gold flowering stage	24.639
	SRR8316908	Gold flowering stage	32.924
SRP132670	SRR6706286	Control	26.872
	SRR6706287	Light intensity 50%	33.910
	SRR6706288	Light intensity 20%	31.022
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.678
	CNS0095593	Slightly white alabastrum(diploid) 2	26.780
	CNS0095594	Slightly white alabastrum(diploid) 3	18.334
	CNS0095595	Whole white alabastrum(diploid) 2	22.051
	CNS0095596	Whole white alabastrum(diploid) 3	5.421
	CNS0095597	Whole white alabastrum(diploid) 4	17.079
	CNS0095598	Silvery flower (diploied) 1	43.873
	CNS0095599	Silvery flower (diploied) 2	44.165
	CNS0095600	Silvery flower (diploied) 3	41.708
	CNS0095601	Golden flower (diploid) 1	51.476
	CNS0095602	Golden flower (diploid) 2	68.544
	CNS0095603	Golden flower (diploid) 3	59.659
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.459
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.204
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.375
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.965
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.966
	CNS0095610	Silvery flower (tetraploid) 1	22.783
	CNS0095611	Silvery flower (tetraploid) 2	20.885
	CNS0095612	Silvery flower (tetraploid) 3	17.461
	CNS0095613	Golden flower (tetraploid) 1	11.290
	CNS0095614	Golden flower (tetraploid) 2	20.976
	CNS0095615	Golden flower (tetraploid) 3	26.369
CRA001975	CRR073297	Stem 1	23.060
	CRR073298	Stem 2	19.386
	CRR073299	Stem 3	20.796
	CRR073300	Leaf 1	38.242
	CRR073301	Leaf 2	42.045
	CRR073302	Leaf 3	21.779
	CRR073303	Juvenile bud 1	24.980
	CRR073304	Juvenile bud 2	38.599
	CRR073305	Juvenile bud 3	39.246
	CRR073306	Third green 1	13.665
	CRR073307	Third green 2	13.246
	CRR073308	Third green 3	13.452
	CRR073309	Second white 1	12.670
	CRR073310	Second white 2	11.065
	CRR073311	Second white 3	9.194
	CRR073312	Silver flowering 1	14.853
	CRR073313	Silver flowering 2	14.521
	CRR073314	Silver flowering 3	13.072
	CRR073315	Gold flowering 1	13.347
	CRR073316	Gold flowering 2	23.365
	CRR073317	Gold flowering 3	24.080
	CRR073318	Tawny withering 1	27.383
	CRR073319	Tawny withering 2	41.496
	CRR073320	Tawny withering 3	32.388