Gene detail

Detail information of GWHGAAZE005659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010935728.1	9.4466E-108	PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0S2N9\|M0S2N9_MUSAM	4E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P24320_001}
TAIR10	AT5G04250.2	3E-72	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11594069	11597731	+
GWHAAZE00000002	mRNA	11594069	11597731	+
GWHAAZE00000002	exon	11594069	11594148	+
GWHAAZE00000002	exon	11594273	11594327	+
GWHAAZE00000002	exon	11596434	11596508	+
GWHAAZE00000002	exon	11596629	11596702	+
GWHAAZE00000002	exon	11596806	11596854	+
GWHAAZE00000002	exon	11597082	11597166	+
GWHAAZE00000002	exon	11597412	11597468	+
GWHAAZE00000002	exon	11597670	11597731	+
GWHAAZE00000002	CDS	11594069	11594148	+
GWHAAZE00000002	CDS	11594273	11594327	+
GWHAAZE00000002	CDS	11596434	11596508	+
GWHAAZE00000002	CDS	11596629	11596702	+
GWHAAZE00000002	CDS	11596806	11596854	+
GWHAAZE00000002	CDS	11597082	11597166	+
GWHAAZE00000002	CDS	11597412	11597468	+
GWHAAZE00000002	CDS	11597670	11597731	+

Transcript Sequence
>GWHTAAZE005667 ATGCAGCATGTACCCAGAATCAATGGTGATATACCCTCAATGGATGAAGCAACCTCTGATCATCAAAGGCTGCAAGACAGGTTGAAATTATATAACTTGGTTGAGTGCAAGGTTCAGGGTGATGGTAATTGTCAGTTCCGTGCTTTGTCAGATCAATTCTATCGTACCACGGAGCATCACAAATTTGTGAGACGGCAAGTGGTTAATCAGCTTAAGTCTCACCCAGAGCTGTATGAGGGATATGTTCCCATGGCATATGGTGAATATTTGAAGAAGATGTCCAAGAGTGGTGAGTGGGGCGATCATGTCACCTTGCAGGCAGCTGCAGATTCATATAGTATAAAGATCTTTGTAATAACTTCATTTAAAGATACCTGTTCAATCGAGATTCTGCCTAAGGTCGAAAAGTCAAACCGAGTCATTTTCTTGAGTTTTTGGGCGGAGGTGCACTACAACTCGATCTATCCTCAAGGAGAGTTGCCGCTATATGATTCAAAGAGGAAGAAAGGGTGGTGGATTTTTGGGCATAAGCATTAG

Network for GWHGAAZE005659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02338.20	OTU	39	126	6.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.126
	SRR3591706	second leaf	7.951
	SRR3591707	mature leaf	8.927
	SRR3591708	Shoot apex	9.876
	SRR3591709	Stem	33.449
	SRR3591710	White floral bud	19.710
	SRR3591711	White flower	25.830
	SRR3591712	Green floral bud	12.465
	SRR3591713	Yellow flower	36.890
SRP173429	SRR8316895	Juvenile bud stage	7.751
	SRR8316896	Juvenile bud stage	10.359
	SRR8316897	Juvenile bud stage	7.240
	SRR8316894	Third green stage	3.165
	SRR8316900	Third green stage	8.179
	SRR8316901	Third green stage	8.647
	SRR8316898	Complete white stage	6.460
	SRR8316899	Complete white stage	12.014
	SRR8316903	Complete white stage	9.454
	SRR8316902	Silver flowering stage	12.841
	SRR8316904	Silver flowering stage	12.480
	SRR8316905	Silver flowering stage	5.794
	SRR8316906	Gold flowering stage	20.047
	SRR8316907	Gold flowering stage	15.860
	SRR8316908	Gold flowering stage	23.986
SRP132670	SRR6706286	Control	5.884
	SRR6706287	Light intensity 50%	5.829
	SRR6706288	Light intensity 20%	6.934
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.226
	CNS0095593	Slightly white alabastrum(diploid) 2	19.504
	CNS0095594	Slightly white alabastrum(diploid) 3	23.186
	CNS0095595	Whole white alabastrum(diploid) 2	13.677
	CNS0095596	Whole white alabastrum(diploid) 3	9.016
	CNS0095597	Whole white alabastrum(diploid) 4	15.565
	CNS0095598	Silvery flower (diploied) 1	18.710
	CNS0095599	Silvery flower (diploied) 2	9.727
	CNS0095600	Silvery flower (diploied) 3	8.806
	CNS0095601	Golden flower (diploid) 1	11.853
	CNS0095602	Golden flower (diploid) 2	10.884
	CNS0095603	Golden flower (diploid) 3	11.061
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.029
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.936
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.569
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.365
	CNS0095610	Silvery flower (tetraploid) 1	13.581
	CNS0095611	Silvery flower (tetraploid) 2	6.629
	CNS0095612	Silvery flower (tetraploid) 3	12.479
	CNS0095613	Golden flower (tetraploid) 1	12.857
	CNS0095614	Golden flower (tetraploid) 2	14.070
	CNS0095615	Golden flower (tetraploid) 3	15.537
CRA001975	CRR073297	Stem 1	13.011
	CRR073298	Stem 2	9.360
	CRR073299	Stem 3	6.602
	CRR073300	Leaf 1	11.734
	CRR073301	Leaf 2	10.518
	CRR073302	Leaf 3	5.631
	CRR073303	Juvenile bud 1	6.489
	CRR073304	Juvenile bud 2	5.450
	CRR073305	Juvenile bud 3	5.820
	CRR073306	Third green 1	4.271
	CRR073307	Third green 2	6.392
	CRR073308	Third green 3	3.359
	CRR073309	Second white 1	1.886
	CRR073310	Second white 2	4.585
	CRR073311	Second white 3	2.519
	CRR073312	Silver flowering 1	3.568
	CRR073313	Silver flowering 2	3.237
	CRR073314	Silver flowering 3	2.981
	CRR073315	Gold flowering 1	8.989
	CRR073316	Gold flowering 2	9.867
	CRR073317	Gold flowering 3	3.750
	CRR073318	Tawny withering 1	13.577
	CRR073319	Tawny withering 2	34.087
	CRR073320	Tawny withering 3	22.774