Detail information of GWHGAAZE005660


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281963.13.46906E-55PREDICTED: transcription factor TCP11 [Vitis vinifera]
Swissprottr|Q9SJK7|TCP11_ARATH3E-37Transcription factor TCP11
trEMBLtr|F6HR41|F6HR41_VITVI1E-55Putative uncharacterized protein {ECO:0000313|EMBL:CCB57090.1}
TAIR10AT2G37000.19E-30TCP family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1160574311606351-
GWHAAZE00000002mRNA1160574311606351-
GWHAAZE00000002exon1160574311606351-
GWHAAZE00000002CDS1160574311606351-
Transcript Sequence

Network for GWHGAAZE005660

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03634.14TCP481556.30E-27
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTCP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.207
SRR3591706second leaf0.619
SRR3591707mature leaf0.528
SRR3591708Shoot apex5.548
SRR3591709Stem0.000
SRR3591710White floral bud1.417
SRR3591711White flower0.548
SRR3591712Green floral bud0.856
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.878
SRR8316896Juvenile bud stage 1.435
SRR8316897Juvenile bud stage 0.176
SRR8316894Third green stage 0.228
SRR8316900Third green stage 0.192
SRR8316901Third green stage 0.665
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.397
SRR8316903Complete white stage 0.328
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.128
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.110
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.948
SRR6706287Light intensity 50%0.667
SRR6706288Light intensity 20%1.482
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.789
CNS0095593Slightly white alabastrum(diploid) 20.637
CNS0095594Slightly white alabastrum(diploid) 30.915
CNS0095595Whole white alabastrum(diploid) 20.537
CNS0095596Whole white alabastrum(diploid) 31.653
CNS0095597Whole white alabastrum(diploid) 40.979
CNS0095598Silvery flower (diploied) 10.416
CNS0095599Silvery flower (diploied) 20.308
CNS0095600Silvery flower (diploied) 30.190
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.202
CNS0095603Golden flower (diploid) 30.416
CNS0095604Slightly white alabastrum(tetraploid) 11.426
CNS0095605Slightly white alabastrum(tetraploid) 20.890
CNS0095606Slightly white alabastrum(tetraploid) 31.269
CNS0095607Whole white alabastrum(tetraploid) 10.287
CNS0095608Whole white alabastrum(tetraploid) 20.704
CNS0095609Whole white alabastrum(tetraploid) 30.709
CNS0095610Silvery flower (tetraploid) 10.167
CNS0095611Silvery flower (tetraploid) 20.064
CNS0095612Silvery flower (tetraploid) 30.120
CNS0095613Golden flower (tetraploid) 10.588
CNS0095614Golden flower (tetraploid) 20.257
CNS0095615Golden flower (tetraploid) 30.093
CRA001975CRR073297Stem 11.658
CRR073298Stem 21.598
CRR073299Stem 31.993
CRR073300Leaf 10.832
CRR073301Leaf 20.479
CRR073302Leaf 31.234
CRR073303Juvenile bud 10.679
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.339
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.072
CRR073309Second white 10.071
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.226
CRR073314Silver flowering 30.193
CRR073315Gold flowering 10.689
CRR073316Gold flowering 21.134
CRR073317Gold flowering 31.368
CRR073318Tawny withering 10.231
CRR073319Tawny withering 20.156
CRR073320Tawny withering 30.787