Detail information of GWHGAAZE005666


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010653608.10PREDICTED: TSL-kinase interacting protein 1 isoform X2 [Vitis vinifera]
Swissprottr|Q8LJT8|TKI1_ARATH0TSL-kinase interacting protein 1
trEMBLtr|D7TQP7|D7TQP7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32767.3}
TAIR10AT2G36960.29E-178TSL-kinase interacting protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1167011311676001-
GWHAAZE00000002mRNA1167011311676001-
GWHAAZE00000002exon1167589011676001-
GWHAAZE00000002exon1167568611675759-
GWHAAZE00000002exon1167554111675588-
GWHAAZE00000002exon1167529511675404-
GWHAAZE00000002exon1167460411674688-
GWHAAZE00000002exon1167422011674505-
GWHAAZE00000002exon1167325311673387-
GWHAAZE00000002exon1167299711673148-
GWHAAZE00000002exon1167231911672888-
GWHAAZE00000002exon1167094911671368-
GWHAAZE00000002exon1167062611670760-
GWHAAZE00000002exon1167011311670391-
GWHAAZE00000002CDS1167589011676001-
GWHAAZE00000002CDS1167568611675759-
GWHAAZE00000002CDS1167554111675588-
GWHAAZE00000002CDS1167529511675404-
GWHAAZE00000002CDS1167460411674688-
GWHAAZE00000002CDS1167422011674505-
GWHAAZE00000002CDS1167325311673387-
GWHAAZE00000002CDS1167299711673148-
GWHAAZE00000002CDS1167231911672888-
GWHAAZE00000002CDS1167094911671368-
GWHAAZE00000002CDS1167062611670760-
GWHAAZE00000002CDS1167011311670391-
Transcript Sequence

Network for GWHGAAZE005666

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.815
SRR3591706second leaf13.956
SRR3591707mature leaf14.531
SRR3591708Shoot apex19.366
SRR3591709Stem22.589
SRR3591710White floral bud35.249
SRR3591711White flower31.330
SRR3591712Green floral bud29.182
SRR3591713Yellow flower31.703
SRP173429 SRR8316895Juvenile bud stage 9.942
SRR8316896Juvenile bud stage 13.918
SRR8316897Juvenile bud stage 5.486
SRR8316894Third green stage 7.013
SRR8316900Third green stage 18.337
SRR8316901Third green stage 20.385
SRR8316898Complete white stage 15.553
SRR8316899Complete white stage 28.435
SRR8316903Complete white stage 25.084
SRR8316902Silver flowering stage14.893
SRR8316904Silver flowering stage22.281
SRR8316905Silver flowering stage11.758
SRR8316906Gold flowering stage 34.186
SRR8316907Gold flowering stage 31.674
SRR8316908Gold flowering stage 33.041
SRP132670SRR6706286Control17.005
SRR6706287Light intensity 50%19.184
SRR6706288Light intensity 20%18.518
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.198
CNS0095593Slightly white alabastrum(diploid) 28.534
CNS0095594Slightly white alabastrum(diploid) 38.530
CNS0095595Whole white alabastrum(diploid) 213.720
CNS0095596Whole white alabastrum(diploid) 313.121
CNS0095597Whole white alabastrum(diploid) 416.984
CNS0095598Silvery flower (diploied) 113.117
CNS0095599Silvery flower (diploied) 29.894
CNS0095600Silvery flower (diploied) 331.537
CNS0095601Golden flower (diploid) 112.610
CNS0095602Golden flower (diploid) 230.376
CNS0095603Golden flower (diploid) 328.739
CNS0095604Slightly white alabastrum(tetraploid) 113.076
CNS0095605Slightly white alabastrum(tetraploid) 210.915
CNS0095606Slightly white alabastrum(tetraploid) 321.364
CNS0095607Whole white alabastrum(tetraploid) 115.124
CNS0095608Whole white alabastrum(tetraploid) 219.911
CNS0095609Whole white alabastrum(tetraploid) 322.093
CNS0095610Silvery flower (tetraploid) 125.928
CNS0095611Silvery flower (tetraploid) 228.636
CNS0095612Silvery flower (tetraploid) 335.890
CNS0095613Golden flower (tetraploid) 114.170
CNS0095614Golden flower (tetraploid) 222.426
CNS0095615Golden flower (tetraploid) 338.773
CRA001975CRR073297Stem 121.088
CRR073298Stem 218.750
CRR073299Stem 317.181
CRR073300Leaf 124.244
CRR073301Leaf 217.509
CRR073302Leaf 316.913
CRR073303Juvenile bud 118.796
CRR073304Juvenile bud 218.800
CRR073305Juvenile bud 322.391
CRR073306Third green 123.602
CRR073307Third green 216.357
CRR073308Third green 321.950
CRR073309Second white 121.698
CRR073310Second white 228.256
CRR073311Second white 326.384
CRR073312Silver flowering 125.534
CRR073313Silver flowering 221.642
CRR073314Silver flowering 320.040
CRR073315Gold flowering 18.627
CRR073316Gold flowering 213.636
CRR073317Gold flowering 311.352
CRR073318Tawny withering 113.638
CRR073319Tawny withering 212.889
CRR073320Tawny withering 315.357