Detail information of GWHGAAZE005667


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI32769.30unnamed protein product [Vitis vinifera]
Swissprottr|P12783|PGKY_WHEAT1E-53Phosphoglycerate kinase, cytosolic
trEMBLtr|D7TQP9|D7TQP9_VITVI0Phosphoglycerate kinase {ECO:0000256|RuleBase:RU000532}
TAIR10AT1G56190.26E-47Phosphoglycerate kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1168111111696926-
GWHAAZE00000002mRNA1168111111696926-
GWHAAZE00000002exon1168111111681237-
GWHAAZE00000002exon1168150111681843-
GWHAAZE00000002exon1168200511682103-
GWHAAZE00000002exon1168248611682570-
GWHAAZE00000002exon1168327511683324-
GWHAAZE00000002exon1168932711689383-
GWHAAZE00000002exon1169067611690927-
GWHAAZE00000002exon1169179211691859-
GWHAAZE00000002exon1169218511692470-
GWHAAZE00000002exon1169260211692942-
GWHAAZE00000002exon1169347711693747-
GWHAAZE00000002exon1169431711694363-
GWHAAZE00000002exon1169445611694658-
GWHAAZE00000002exon1169676311696926-
GWHAAZE00000002five_prime_UTR1169676811696926-
GWHAAZE00000002CDS1169676311696767-
GWHAAZE00000002CDS1169445611694658-
GWHAAZE00000002CDS1169431711694363-
GWHAAZE00000002CDS1169347711693747-
GWHAAZE00000002CDS1169260211692942-
GWHAAZE00000002CDS1169218511692470-
GWHAAZE00000002CDS1169179211691859-
GWHAAZE00000002CDS1169067611690927-
GWHAAZE00000002CDS1168932711689383-
GWHAAZE00000002CDS1168327511683324-
GWHAAZE00000002CDS1168248611682570-
GWHAAZE00000002CDS1168200511682103-
GWHAAZE00000002CDS1168160711681843-
GWHAAZE00000002three_prime_UTR1168150111681606-
GWHAAZE00000002three_prime_UTR1168111111681237-
Transcript Sequence

Network for GWHGAAZE005667

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00162.20PGK1114602.20E-56
PF02390.18Methyltransf_45116114.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00927PGK, pgk Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066

Gene Ontology

GO term OntologyName
GO:0006400biological_processtRNA modification
GO:0006096biological_processglycolytic process
GO:0008176molecular_functiontRNA (guanine-N7-)-methyltransferase activity
GO:0004618molecular_functionphosphoglycerate kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.282
SRR3591706second leaf18.599
SRR3591707mature leaf14.266
SRR3591708Shoot apex28.409
SRR3591709Stem17.529
SRR3591710White floral bud10.546
SRR3591711White flower10.851
SRR3591712Green floral bud10.191
SRR3591713Yellow flower9.729
SRP173429 SRR8316895Juvenile bud stage 14.214
SRR8316896Juvenile bud stage 16.884
SRR8316897Juvenile bud stage 9.663
SRR8316894Third green stage 7.456
SRR8316900Third green stage 10.008
SRR8316901Third green stage 12.918
SRR8316898Complete white stage 3.299
SRR8316899Complete white stage 12.565
SRR8316903Complete white stage 7.814
SRR8316902Silver flowering stage3.934
SRR8316904Silver flowering stage5.219
SRR8316905Silver flowering stage2.104
SRR8316906Gold flowering stage 8.992
SRR8316907Gold flowering stage 6.777
SRR8316908Gold flowering stage 7.444
SRP132670SRR6706286Control2.917
SRR6706287Light intensity 50%4.513
SRR6706288Light intensity 20%4.247
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.671
CNS0095593Slightly white alabastrum(diploid) 212.689
CNS0095594Slightly white alabastrum(diploid) 310.639
CNS0095595Whole white alabastrum(diploid) 27.276
CNS0095596Whole white alabastrum(diploid) 35.514
CNS0095597Whole white alabastrum(diploid) 47.486
CNS0095598Silvery flower (diploied) 120.880
CNS0095599Silvery flower (diploied) 214.738
CNS0095600Silvery flower (diploied) 34.861
CNS0095601Golden flower (diploid) 115.256
CNS0095602Golden flower (diploid) 28.760
CNS0095603Golden flower (diploid) 38.786
CNS0095604Slightly white alabastrum(tetraploid) 110.546
CNS0095605Slightly white alabastrum(tetraploid) 28.960
CNS0095606Slightly white alabastrum(tetraploid) 315.354
CNS0095607Whole white alabastrum(tetraploid) 18.185
CNS0095608Whole white alabastrum(tetraploid) 25.640
CNS0095609Whole white alabastrum(tetraploid) 38.268
CNS0095610Silvery flower (tetraploid) 111.590
CNS0095611Silvery flower (tetraploid) 25.959
CNS0095612Silvery flower (tetraploid) 37.542
CNS0095613Golden flower (tetraploid) 17.374
CNS0095614Golden flower (tetraploid) 29.025
CNS0095615Golden flower (tetraploid) 35.749
CRA001975CRR073297Stem 19.593
CRR073298Stem 26.238
CRR073299Stem 31.235
CRR073300Leaf 16.554
CRR073301Leaf 25.315
CRR073302Leaf 31.309
CRR073303Juvenile bud 11.739
CRR073304Juvenile bud 20.762
CRR073305Juvenile bud 31.640
CRR073306Third green 10.094
CRR073307Third green 20.083
CRR073308Third green 30.043
CRR073309Second white 10.463
CRR073310Second white 20.323
CRR073311Second white 30.493
CRR073312Silver flowering 10.133
CRR073313Silver flowering 20.120
CRR073314Silver flowering 30.133
CRR073315Gold flowering 11.505
CRR073316Gold flowering 24.941
CRR073317Gold flowering 31.405
CRR073318Tawny withering 14.038
CRR073319Tawny withering 25.572
CRR073320Tawny withering 32.198