Gene detail

Detail information of GWHGAAZE005678

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008227262.1	1.912E-138	PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like isoform X1 [Prunus mume]
Swissprot	tr\|Q8L817\|ATCA7_ARATH	2E-97	Alpha carbonic anhydrase 7 (Precursor)
trEMBL	tr\|W9RIU8\|W9RIU8_9ROSA	3E-136	Uncharacterized protein {ECO:0000313\|EMBL:EXB75896.1}
TAIR10	AT1G08080.1	4E-79	alpha carbonic anhydrase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11829197	11832831	-
GWHAAZE00000002	mRNA	11829197	11832831	-
GWHAAZE00000002	exon	11829197	11829277	-
GWHAAZE00000002	exon	11829400	11829453	-
GWHAAZE00000002	exon	11829592	11829756	-
GWHAAZE00000002	exon	11830333	11830447	-
GWHAAZE00000002	exon	11830751	11830857	-
GWHAAZE00000002	exon	11832417	11832672	-
GWHAAZE00000002	exon	11832767	11832831	-
GWHAAZE00000002	CDS	11832767	11832831	-
GWHAAZE00000002	CDS	11832417	11832672	-
GWHAAZE00000002	CDS	11830751	11830857	-
GWHAAZE00000002	CDS	11830333	11830447	-
GWHAAZE00000002	CDS	11829592	11829756	-
GWHAAZE00000002	CDS	11829400	11829453	-
GWHAAZE00000002	CDS	11829197	11829277	-

Transcript Sequence
>GWHTAAZE005686 ATGGGTCTCTTCTCCTTTTGCTTCTTCTCTTTCATTCAACGTCATTCACCGTCAAAGCTCAAGAATTTTGATTTGTGTTGTACATGTACATGTACGTACGCAGAGGATGAGAGAGAATTTGATTACACGGAAGGGAGCGAAAAGGGTCCAAGAAGGTGGGGAGAGCTAAAGAAAGAATGGACGGCGTGTAAGAATGGAGGGATGCAGTCTCCTGTTGATATGTCGAATCAAAGGGTGGAGATAATTCCCCGATCTAAGAAGCTCAAAAGAGATTACAAACCTTGTAATGCAACTATCAAGAATCGAGGACATGATATAACGGTTCAATGGATTGGTGACGCTGGATCAATTCAGATCAACGGTACTGATTACCCTCTCCGACAAGCACACTGGCACTCCCCTTCCGAGCATTCGATCAATGGCCGAAGATTTGACATGGAGCTACATCTGGTACACCTAAGCACCAACCCTAACGTACAAAATAAGATAGCCGTTGTTGGTGTCCTCTACAAAATTGGAAAACCTGACCCTTTTCTCTCCAAGTTGGCGAGAAATATATCGTCAATGATGGACAGACATGAAGAAAGAAACTATGGGGTGATGGATCCGAGAGAGATCAAGACCGGTGGTAAACGTTATTACAGATACATGGGTTCCCTCACTGTCCCTCCTTGTACCGAAGGTGTCATTTGGACTATCAATAAAAAGGTGAGAACTGTTTCGAAAGATCAAGTTCATTTGCTTCGCGAAGCTGTCCATGATTATGCTGAGAGAAACGCGAGACCTTTGCAACCAGAAAACCGTCGAGATATCCACCTCTACGATCAACAGGAAAACGAGTGA

Network for GWHGAAZE005678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00194.22	Carb_anhydrase	42	272	9.50E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01674	cah	Metabolic pathways	map01100
K01674	cah	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.981
	SRR3591706	second leaf	3.323
	SRR3591707	mature leaf	1.175
	SRR3591708	Shoot apex	12.623
	SRR3591709	Stem	112.014
	SRR3591710	White floral bud	45.887
	SRR3591711	White flower	10.954
	SRR3591712	Green floral bud	8.855
	SRR3591713	Yellow flower	0.463
SRP173429	SRR8316895	Juvenile bud stage	3.551
	SRR8316896	Juvenile bud stage	3.194
	SRR8316897	Juvenile bud stage	5.801
	SRR8316894	Third green stage	0.609
	SRR8316900	Third green stage	0.469
	SRR8316901	Third green stage	2.392
	SRR8316898	Complete white stage	1.192
	SRR8316899	Complete white stage	4.309
	SRR8316903	Complete white stage	0.785
	SRR8316902	Silver flowering stage	1.537
	SRR8316904	Silver flowering stage	2.960
	SRR8316905	Silver flowering stage	0.352
	SRR8316906	Gold flowering stage	0.774
	SRR8316907	Gold flowering stage	0.656
	SRR8316908	Gold flowering stage	2.093
SRP132670	SRR6706286	Control	0.788
	SRR6706287	Light intensity 50%	2.109
	SRR6706288	Light intensity 20%	0.745
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.371
	CNS0095593	Slightly white alabastrum(diploid) 2	17.841
	CNS0095594	Slightly white alabastrum(diploid) 3	10.288
	CNS0095595	Whole white alabastrum(diploid) 2	5.884
	CNS0095596	Whole white alabastrum(diploid) 3	0.767
	CNS0095597	Whole white alabastrum(diploid) 4	2.420
	CNS0095598	Silvery flower (diploied) 1	4.212
	CNS0095599	Silvery flower (diploied) 2	10.735
	CNS0095600	Silvery flower (diploied) 3	3.359
	CNS0095601	Golden flower (diploid) 1	5.558
	CNS0095602	Golden flower (diploid) 2	3.751
	CNS0095603	Golden flower (diploid) 3	3.429
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.766
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.107
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.245
	CNS0095611	Silvery flower (tetraploid) 2	1.904
	CNS0095612	Silvery flower (tetraploid) 3	4.853
	CNS0095613	Golden flower (tetraploid) 1	0.724
	CNS0095614	Golden flower (tetraploid) 2	0.107
	CNS0095615	Golden flower (tetraploid) 3	3.790
CRA001975	CRR073297	Stem 1	3.248
	CRR073298	Stem 2	3.951
	CRR073299	Stem 3	3.376
	CRR073300	Leaf 1	1.591
	CRR073301	Leaf 2	3.291
	CRR073302	Leaf 3	4.357
	CRR073303	Juvenile bud 1	4.545
	CRR073304	Juvenile bud 2	12.834
	CRR073305	Juvenile bud 3	2.938
	CRR073306	Third green 1	13.357
	CRR073307	Third green 2	17.877
	CRR073308	Third green 3	11.908
	CRR073309	Second white 1	0.640
	CRR073310	Second white 2	2.104
	CRR073311	Second white 3	1.419
	CRR073312	Silver flowering 1	10.233
	CRR073313	Silver flowering 2	11.898
	CRR073314	Silver flowering 3	4.203
	CRR073315	Gold flowering 1	10.462
	CRR073316	Gold flowering 2	8.769
	CRR073317	Gold flowering 3	9.831
	CRR073318	Tawny withering 1	126.468
	CRR073319	Tawny withering 2	247.860
	CRR073320	Tawny withering 3	168.234