Gene detail

Detail information of GWHGAAZE005681

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010039059.1	0	PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Eucalyptus grandis]
trEMBL	tr\|A0A059A3V0\|A0A059A3V0_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW48802.1}
TAIR10	AT5G27730.1	1E-155	Protein of unknown function (DUF1624)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11920237	11923938	+
GWHAAZE00000002	mRNA	11920237	11923938	+
GWHAAZE00000002	exon	11920237	11920368	+
GWHAAZE00000002	exon	11920467	11920604	+
GWHAAZE00000002	exon	11920775	11920856	+
GWHAAZE00000002	exon	11921311	11921387	+
GWHAAZE00000002	exon	11921494	11921609	+
GWHAAZE00000002	exon	11921680	11921788	+
GWHAAZE00000002	exon	11922194	11922310	+
GWHAAZE00000002	exon	11922409	11922500	+
GWHAAZE00000002	exon	11922590	11922656	+
GWHAAZE00000002	exon	11922774	11922855	+
GWHAAZE00000002	exon	11923356	11923447	+
GWHAAZE00000002	exon	11923551	11923694	+
GWHAAZE00000002	exon	11923792	11923938	+
GWHAAZE00000002	CDS	11920237	11920368	+
GWHAAZE00000002	CDS	11920467	11920604	+
GWHAAZE00000002	CDS	11920775	11920856	+
GWHAAZE00000002	CDS	11921311	11921387	+
GWHAAZE00000002	CDS	11921494	11921609	+
GWHAAZE00000002	CDS	11921680	11921788	+
GWHAAZE00000002	CDS	11922194	11922310	+
GWHAAZE00000002	CDS	11922409	11922500	+
GWHAAZE00000002	CDS	11922590	11922656	+
GWHAAZE00000002	CDS	11922774	11922855	+
GWHAAZE00000002	CDS	11923356	11923447	+
GWHAAZE00000002	CDS	11923551	11923694	+
GWHAAZE00000002	CDS	11923792	11923938	+

Transcript Sequence
>GWHTAAZE005689 ATGAGAAAGAAGAGGCGAGCACGAACCAGTTTGGACCAGCCAGAGGAGCGTAAGGATGAGCAACCGTTAATGATTAAGCCCAAGAACCAGAGGGTTGCTACCTTAGATGTATTTAGAGGCCTCACTATTGTGGTGATGATATTGGTAGATGATGCCGGGGGAGCGTATCCACGCATTGATCACTCACCATGGAATGGTTGCACGTTGGCCGACTTTGTGATGCCCTTCTTCCTATTCATTGTTGGAGTTGCAATAGCGCTCGCCCTCAAACGAATTCCAAAGGTGAACTTTGCAATCAGAAGGATCATCACAAGGACATTGAAGCTTCTCTTTTGGGGAATTCTATTGCAAGGAGGATACTCTCACGCGCCTGATGATTTGTCTTACGGCGTTGACATGAAGCAAATCCGATGGTTCGGTATCCTTCAGAGAATAGCTGTGGTATATTGTGTTGTAGCTCTAATAGAGACTTTGACCACCAAGCTCAGACCCACTGTCCTATACCCTGCTCACTTCTCCATATTCACAGCATACAAATGGCAATGGTTTGGAGGATTTCTCGCTTTCCTTGTATACATGATCACGACGTATGCTTTATATGTTCCAGACTGGAGTTTTATGGTACACCACCGTCATGGACCAGAGCAATACACAGTAAAATGCGGCATGAGAGGGCATTTAGGACCAGGATGCAATGCGGTTGGTTATGTGGATCGCCAAGTCTGGGGCATCAATCATCTCTACACGGGACCCGTTTGGAGTCGCCTAAAGGCTTGCACATTTAGTTCTCCGGCTTCTGGTCCTCTACGTAAGGATGCTCCAAATTGGTGCCGGGGTCCATTTGAACCGGAAGGCTTGTTGAGTACAATTTCGGCTATTCTTTCTGGAACAATAGGCATTCATTATGGACACGTCTTGATTCATTTCAAGGGGCATGCCGAGAGGCTCAAGCAATGGATCTCAATGGCGCTTTGCTTGCTTATCCTCGCTATTATTCTTCATTTTACAGATGCTATTCCTATAAACAAACAGCTGTACAGCTTCAGTTACGTCTGTTTTACAGCCGGTGCTGCTGGAATCGTGTTCTCTGCCTTCTACATTCTCATCGATGTTTGGGGACTACGAACACCATTCTTGTTCCTCGAATGGATAGGAATGAACGCGATGCTGGTGTTCGTGATGGCGGCTCAAGGAATCTTTGCAGGGTTCATAAACGGATGGTATTACAAGACTCCAGATAACAATCTAGTGAATTGGATTCAAGAACATGTTTTTAACGATGTTTGGAAATCTGAGAGAGTGGGGACGCTTTTGTACGTTATATTTGCCGAAATCACATTCTGGGGAGTGGTCTCTGGCATCTTGCACAGGTTGGGTATATACTGGAAATTATGA

Network for GWHGAAZE005681

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07786.13	DUF1624	31	175	5.40E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10532	HGSNAT	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.204
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.190
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.183
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.025
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.063
	SRR8316901	Third green stage	0.016
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.091
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.117
	SRR6706287	Light intensity 50%	0.042
	SRR6706288	Light intensity 20%	0.101
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.438
	CNS0095593	Slightly white alabastrum(diploid) 2	0.261
	CNS0095594	Slightly white alabastrum(diploid) 3	0.150
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.505
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.028
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.350
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.032
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.008
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.120
	CRR073298	Stem 2	0.048
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.045
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.008
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.066
	CRR073316	Gold flowering 2	0.405
	CRR073317	Gold flowering 3	1.061
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000