Gene detail

Detail information of GWHGAAZE005684

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653987.1	0	PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Vitis vinifera]
trEMBL	tr\|D7TIS4\|D7TIS4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30150.3}
TAIR10	AT5G03450.1	1E-123	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11963193	11983119	+
GWHAAZE00000002	mRNA	11963193	11983119	+
GWHAAZE00000002	exon	11963193	11963290	+
GWHAAZE00000002	exon	11971354	11971539	+
GWHAAZE00000002	exon	11972055	11972130	+
GWHAAZE00000002	exon	11972247	11972336	+
GWHAAZE00000002	exon	11972423	11972467	+
GWHAAZE00000002	exon	11973774	11973861	+
GWHAAZE00000002	exon	11973970	11974025	+
GWHAAZE00000002	exon	11974547	11974657	+
GWHAAZE00000002	exon	11974746	11974882	+
GWHAAZE00000002	exon	11975015	11975054	+
GWHAAZE00000002	exon	11975640	11975702	+
GWHAAZE00000002	exon	11975787	11975980	+
GWHAAZE00000002	exon	11977482	11977978	+
GWHAAZE00000002	exon	11978704	11978761	+
GWHAAZE00000002	exon	11982984	11983119	+
GWHAAZE00000002	CDS	11963193	11963290	+
GWHAAZE00000002	CDS	11971354	11971539	+
GWHAAZE00000002	CDS	11972055	11972130	+
GWHAAZE00000002	CDS	11972247	11972336	+
GWHAAZE00000002	CDS	11972423	11972467	+
GWHAAZE00000002	CDS	11973774	11973861	+
GWHAAZE00000002	CDS	11973970	11974025	+
GWHAAZE00000002	CDS	11974547	11974657	+
GWHAAZE00000002	CDS	11974746	11974882	+
GWHAAZE00000002	CDS	11975015	11975054	+
GWHAAZE00000002	CDS	11975640	11975702	+
GWHAAZE00000002	CDS	11975787	11975980	+
GWHAAZE00000002	CDS	11977482	11977978	+
GWHAAZE00000002	CDS	11978704	11978761	+
GWHAAZE00000002	CDS	11982984	11983119	+

Transcript Sequence
>GWHTAAZE005692 ATGGAATCGAGCGGAGTGATAGAGAGAGAAGGTGACCTGGCTGAGGGCGCAATGGAAGACGAGGGTGTCTTTGCCTTTGACGGATTCGAGGAGCGTGGGGTTTCACAGCCTGGTCATGAAGAAAATGAAGATAGTCAGAGGACAGAAGGCGGTGGAGTTTCGTCGTCGAACGGTAAAGTTGGAAGCCAAGAGAATGGAGAAGAGTGGAATCGAAGTGAAGTCGATGGCCTCTTTTGCCCTATTTGCATGGAAGCTTGGACCAATGGTGGAGATCATCAAATCTGTTGTCTTCCATGCGGACACATATATGGTTTGTCTTGTATCAAGAGATGGATTCAACAACGTCAAAGTTCGGGAAAGTGTCCCCAATGCAACAGGAAATGCACGTTGAAGGATGTTAGGGTACTTTATGCATCAAGACTTGTTGTTGTTGATGAAGAATTGCAAAAGAAAGTACGGTCACTTGAAGCTAAATGTACTTCTCTTGGGAAAAAGAGGTCAAGTTATTTGGAGGGTTTGCTAGGAGATGAGCAACGAAGGTATTCAGGGTCATTCCCTAGTGGAGGCTGTGGGGGCCAAACAGGGAATCACCGTAGTCCAATATTTGTCGGAGGATTGTCAAGTGGCTTTGCATTACAGAATGAGTTGCAGGTAGAAGGTGCCCGATGTTTTGATGTGGTTGCTTCTCGCCAAATTCTTATAATTGCTCAAAGGCGCAGTGGAATGGGTGGAATGCATGTGCTTACCAAAATGAGCCTGATAGCTCCCAATGAAAGAGAAAACATTCATCTTCCTGTAAATACAAAAGCTGTTAAGGACCTTCGTGTTTCCCCTCACAGCAGACTTGTGCTGCTGGCATCCTTAGGGAAGAAATTATCTGTTCTGAGTACGGAAAGCAACAATATAATTGTCAGCCATGATTTACCGGCTGCTGCTTGGTCATGTTCCTGGGATATCAACAGTCCGCATCATCTATACGCCGGATTACAGAATGGGATGCTTCTGGGGTTTGATATGCGGCAAACTAGGAGTCCTATGGAATCCATGTCTGGTTTGACTTGCAACCCTATTCACAGTGTACACTCCCTTTCACCTGATTCAGCTTGCCGTTCTGGTGTTAAAACCCTCCTAACCGCCTCTTCAGTTGGCTTGTGTGAGTGGAAGTTTGGTGACATTGAAAAAAGGCCCTTTTTAGTTCCAGAATCAGAGAATCAAGGAGTTTGCATATCCCTTGCTTGTTCTCCCAGTAGTAGTGACATTGTTGCTTCATTCCGCCCCAAAGTTGAGATGGCCGGGGATTTCACTGTTTCTCAACAATTTCTTACTCCTTCCGCTTCTCTTATGGGCCAGGGAGTACAGGGTTCTCATGTTCTTTACCAGAGATTGGGTAGTTGGTGTTATCAGAGATTAGGATCTTCATGTGCCACTATAGATGGTACTCGAATGGTAAAATCCGCAATTATTGACAGAGAAAATCATACCCCGTTGTTTGCTTCAGGGGATGTTGCAACTAATGAATTGGCCCTGCAAGAATTGCCCTCTTTAACAGTTATTCAGCGTTTGAAATCTCGTAGGCATCCTATTTGGGATGTGAAGTACATGCACCTGGTAAACTCTGGATTACTTGGTTGCTTAACCACAGATACATTGCAACTCTTTTCTCGAGCCTCTTGTGAGAAAGGTTGCAGTTTAATGGCAAGCGGCTATGACTTATCTGCCATCGTTTTGTGCCATATTTTAGCCGAAGTGGTAGACGATTTTGGCTCGGCTTTGTCGGTGGTCACCATCGCTAATTTCATTGGCATTTTCATTGCTATTTTTGATTGGGTTTGCCGGTGGTTCACCGCAGCTAATTTCACCGTCTCTGCTCTTTAA

Network for GWHGAAZE005684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	79	125	5.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.183
	SRR3591706	second leaf	10.441
	SRR3591707	mature leaf	14.620
	SRR3591708	Shoot apex	21.165
	SRR3591709	Stem	17.492
	SRR3591710	White floral bud	17.266
	SRR3591711	White flower	20.279
	SRR3591712	Green floral bud	12.221
	SRR3591713	Yellow flower	20.580
SRP173429	SRR8316895	Juvenile bud stage	8.581
	SRR8316896	Juvenile bud stage	14.713
	SRR8316897	Juvenile bud stage	5.875
	SRR8316894	Third green stage	5.075
	SRR8316900	Third green stage	11.259
	SRR8316901	Third green stage	12.829
	SRR8316898	Complete white stage	6.133
	SRR8316899	Complete white stage	19.611
	SRR8316903	Complete white stage	11.859
	SRR8316902	Silver flowering stage	6.897
	SRR8316904	Silver flowering stage	7.594
	SRR8316905	Silver flowering stage	3.516
	SRR8316906	Gold flowering stage	16.666
	SRR8316907	Gold flowering stage	12.799
	SRR8316908	Gold flowering stage	13.417
SRP132670	SRR6706286	Control	6.867
	SRR6706287	Light intensity 50%	7.716
	SRR6706288	Light intensity 20%	8.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.148
	CNS0095593	Slightly white alabastrum(diploid) 2	7.948
	CNS0095594	Slightly white alabastrum(diploid) 3	8.117
	CNS0095595	Whole white alabastrum(diploid) 2	10.012
	CNS0095596	Whole white alabastrum(diploid) 3	8.480
	CNS0095597	Whole white alabastrum(diploid) 4	7.671
	CNS0095598	Silvery flower (diploied) 1	11.080
	CNS0095599	Silvery flower (diploied) 2	8.559
	CNS0095600	Silvery flower (diploied) 3	9.961
	CNS0095601	Golden flower (diploid) 1	8.308
	CNS0095602	Golden flower (diploid) 2	10.345
	CNS0095603	Golden flower (diploid) 3	10.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.253
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.728
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.033
	CNS0095610	Silvery flower (tetraploid) 1	8.491
	CNS0095611	Silvery flower (tetraploid) 2	7.400
	CNS0095612	Silvery flower (tetraploid) 3	9.011
	CNS0095613	Golden flower (tetraploid) 1	6.623
	CNS0095614	Golden flower (tetraploid) 2	6.172
	CNS0095615	Golden flower (tetraploid) 3	9.777
CRA001975	CRR073297	Stem 1	14.976
	CRR073298	Stem 2	11.812
	CRR073299	Stem 3	11.297
	CRR073300	Leaf 1	14.061
	CRR073301	Leaf 2	12.100
	CRR073302	Leaf 3	7.253
	CRR073303	Juvenile bud 1	9.546
	CRR073304	Juvenile bud 2	5.335
	CRR073305	Juvenile bud 3	9.250
	CRR073306	Third green 1	5.788
	CRR073307	Third green 2	4.762
	CRR073308	Third green 3	7.197
	CRR073309	Second white 1	4.689
	CRR073310	Second white 2	4.697
	CRR073311	Second white 3	5.001
	CRR073312	Silver flowering 1	8.127
	CRR073313	Silver flowering 2	9.309
	CRR073314	Silver flowering 3	5.325
	CRR073315	Gold flowering 1	7.377
	CRR073316	Gold flowering 2	10.845
	CRR073317	Gold flowering 3	6.136
	CRR073318	Tawny withering 1	10.853
	CRR073319	Tawny withering 2	14.159
	CRR073320	Tawny withering 3	11.599