Gene detail

Detail information of GWHGAAZE005688

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011077317.1	PREDICTED: S-adenosylmethionine synthase 3 [Sesamum indicum]
Swissprot	tr\|Q96553\|METK3_CATRO	S-adenosylmethionine synthase 3
trEMBL	tr\|B9S0G1\|B9S0G1_RICCO	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}
TAIR10	AT2G36880.2	methionine adenosyltransferase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	12038438	12039610	-
GWHAAZE00000002	mRNA	12038438	12039610	-
GWHAAZE00000002	exon	12038438	12039610	-
GWHAAZE00000002	CDS	12038438	12039610	-

Transcript Sequence
>GWHTAAZE005696 ATGGAAACCTTCCTTTTCACCTCGGAATCTGTTAACGAAGGCCATCCTGACAAGCTCTGTGACCAAGTCTCAGACGCCATTCTCGATGCTTGCCTCGAACAAGATCCAGAGAGCAAAGTTGCCTGTGAAACATGCACGAAAACTAACATGGTCATGGTGTTTGGCGAAATTACAACCAAGGCCACGGTTAACTATGAGAAAATAGTTCGAGACACTTGCCGAGGCATTGGCTTCACATCCCCGGATGTTGGCCTTGATGCTGATCACTGCAAGGTCCTCGTCAACATTGAGCAACAAAGCCCCGACATTGCCCAGGGTGTCCATGGTCACCTCACCAAGAAACCCGAGGAAATTGGAGCTGGTGATCAAGGCCACATGTTTGGCTATGCCACTGATGAGACCCCAGAGCTAATGCCTCTCACTCATGTCCTTGCCACAAAGCTCGGGGCCAAGCTCACCGAGGTCAGAAAGAACAAGACTTGTCCGTGGCTCAGGCCTGATGGTAAGACCCAAGTGACTGTCGAATACCGAAATGACGGTGGTGCTATGGTACCCATCAGGGTCCACACCGTTCTCATCTCGACCCAACATGACGAGACTGTTACAAATGAGAAAATAGCTGCAGATTTGAAAGAGCATGTGATTAAGCCTGTCATCCCAGCTCAGTATCTGGACGATAAGACCATCTTCCACCTCAACCCATCTGGTCGGTTTGTGATCGGCGGCCCCCATGGTGATGCAGGTCTCACAGGTCGGAAGATTATCATCGACACCTATGGTGGGTGGGGTGCTCACGGTGGTGGCGCTTTCTCCGGGAAAGATCCTACAAAGGTGGACCGGAGCGGGGCCTACATAGTTAGGCAGGCGGCTAAGAGTATTGTGGCTTCAGGACTGGCCCGCCGTTGTATTGTGCAGGTTTCATACGCAATTGGCGTGGCTGAACCGCTTTCAGTATTTGTGGATACTTACAAGACAGGGAAAATTCCGGATAAGGATATATTGGGTTTGATTAAGGAGAGCTTTGACTTTAGGCCTGGAATGATGGCTATCAATCTTGATCTGAAGAGAGGAGGCAATTTCAGGTACCAAAAAACGGCTGCTTATGGCCATTTTGGCCGTGATGATAAAGATTTCACCTGGGAGACTGTCAAGATTCTCAAACCTAAGGCCTGA

Network for GWHGAAZE005688

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00438.21	S-AdoMet_synt_N	4	101	2.60E-42
PF02772.17	S-AdoMet_synt_M	117	238	4.20E-48
PF02773.17	S-AdoMet_synt_C	240	381	1.60E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00789	metK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006556	biological_process	S-adenosylmethionine biosynthetic process
GO:0004478	molecular_function	methionine adenosyltransferase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	304.775
	SRR3591706	second leaf	49.196
	SRR3591707	mature leaf	15.148
	SRR3591708	Shoot apex	60.714
	SRR3591709	Stem	598.390
	SRR3591710	White floral bud	59.470
	SRR3591711	White flower	40.291
	SRR3591712	Green floral bud	158.166
	SRR3591713	Yellow flower	56.096
SRP173429	SRR8316895	Juvenile bud stage	64.881
	SRR8316896	Juvenile bud stage	79.707
	SRR8316897	Juvenile bud stage	31.394
	SRR8316894	Third green stage	30.451
	SRR8316900	Third green stage	144.190
	SRR8316901	Third green stage	152.307
	SRR8316898	Complete white stage	13.565
	SRR8316899	Complete white stage	37.866
	SRR8316903	Complete white stage	21.864
	SRR8316902	Silver flowering stage	24.757
	SRR8316904	Silver flowering stage	35.401
	SRR8316905	Silver flowering stage	15.435
	SRR8316906	Gold flowering stage	74.818
	SRR8316907	Gold flowering stage	76.476
	SRR8316908	Gold flowering stage	99.166
SRP132670	SRR6706286	Control	130.597
	SRR6706287	Light intensity 50%	123.311
	SRR6706288	Light intensity 20%	120.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	72.055
	CNS0095593	Slightly white alabastrum(diploid) 2	44.404
	CNS0095594	Slightly white alabastrum(diploid) 3	60.943
	CNS0095595	Whole white alabastrum(diploid) 2	66.777
	CNS0095596	Whole white alabastrum(diploid) 3	74.307
	CNS0095597	Whole white alabastrum(diploid) 4	63.813
	CNS0095598	Silvery flower (diploied) 1	18.952
	CNS0095599	Silvery flower (diploied) 2	19.625
	CNS0095600	Silvery flower (diploied) 3	23.849
	CNS0095601	Golden flower (diploid) 1	17.224
	CNS0095602	Golden flower (diploid) 2	22.821
	CNS0095603	Golden flower (diploid) 3	21.414
	CNS0095604	Slightly white alabastrum(tetraploid) 1	90.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.519
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.501
	CNS0095607	Whole white alabastrum(tetraploid) 1	108.417
	CNS0095608	Whole white alabastrum(tetraploid) 2	140.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	147.374
	CNS0095610	Silvery flower (tetraploid) 1	21.302
	CNS0095611	Silvery flower (tetraploid) 2	13.496
	CNS0095612	Silvery flower (tetraploid) 3	31.503
	CNS0095613	Golden flower (tetraploid) 1	25.857
	CNS0095614	Golden flower (tetraploid) 2	32.812
	CNS0095615	Golden flower (tetraploid) 3	21.542
CRA001975	CRR073297	Stem 1	165.241
	CRR073298	Stem 2	119.565
	CRR073299	Stem 3	132.155
	CRR073300	Leaf 1	120.193
	CRR073301	Leaf 2	143.499
	CRR073302	Leaf 3	153.952
	CRR073303	Juvenile bud 1	116.974
	CRR073304	Juvenile bud 2	121.405
	CRR073305	Juvenile bud 3	57.530
	CRR073306	Third green 1	105.122
	CRR073307	Third green 2	83.727
	CRR073308	Third green 3	75.160
	CRR073309	Second white 1	58.001
	CRR073310	Second white 2	41.779
	CRR073311	Second white 3	44.426
	CRR073312	Silver flowering 1	157.639
	CRR073313	Silver flowering 2	217.469
	CRR073314	Silver flowering 3	204.746
	CRR073315	Gold flowering 1	43.466
	CRR073316	Gold flowering 2	34.315
	CRR073317	Gold flowering 3	51.936
	CRR073318	Tawny withering 1	257.739
	CRR073319	Tawny withering 2	233.090
	CRR073320	Tawny withering 3	276.177