Detail information of GWHGAAZE005698


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN02285.10Putative pectinesterase 15 [Glycine soja]
Swissprottr|Q9ZQA3|PME15_ARATH4E-143Probable pectinesterase 15 (Precursor)
trEMBLtr|M5W7H1|M5W7H1_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ05208.1}
TAIR10AT2G36720.17E-168Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1229011812305450-
GWHAAZE00000002mRNA1229011812305450-
GWHAAZE00000002exon1230513212305450-
GWHAAZE00000002exon1230490612305069-
GWHAAZE00000002exon1230299712303201-
GWHAAZE00000002exon1230280512302874-
GWHAAZE00000002exon1230023812300309-
GWHAAZE00000002exon1230004212300123-
GWHAAZE00000002exon1229988512299944-
GWHAAZE00000002exon1229975712299809-
GWHAAZE00000002exon1229949212299658-
GWHAAZE00000002exon1229905612299269-
GWHAAZE00000002exon1229883612298893-
GWHAAZE00000002exon1229865212298708-
GWHAAZE00000002exon1229830012298545-
GWHAAZE00000002exon1229798912298053-
GWHAAZE00000002exon1229782112297877-
GWHAAZE00000002exon1229753312297626-
GWHAAZE00000002exon1229610712296247-
GWHAAZE00000002exon1229212212292300-
GWHAAZE00000002exon1229173212291903-
GWHAAZE00000002exon1229086812291074-
GWHAAZE00000002exon1229046312290716-
GWHAAZE00000002exon1229011812290337-
GWHAAZE00000002CDS1230513212305450-
GWHAAZE00000002CDS1230490612305069-
GWHAAZE00000002CDS1230299712303201-
GWHAAZE00000002CDS1230280512302874-
GWHAAZE00000002CDS1230023812300309-
GWHAAZE00000002CDS1230004212300123-
GWHAAZE00000002CDS1229988512299944-
GWHAAZE00000002CDS1229975712299809-
GWHAAZE00000002CDS1229949212299658-
GWHAAZE00000002CDS1229905612299269-
GWHAAZE00000002CDS1229883612298893-
GWHAAZE00000002CDS1229865212298708-
GWHAAZE00000002CDS1229830012298545-
GWHAAZE00000002CDS1229798912298053-
GWHAAZE00000002CDS1229782112297877-
GWHAAZE00000002CDS1229753312297626-
GWHAAZE00000002CDS1229610712296247-
GWHAAZE00000002CDS1229212212292300-
GWHAAZE00000002CDS1229173212291903-
GWHAAZE00000002CDS1229086812291074-
GWHAAZE00000002CDS1229046312290716-
GWHAAZE00000002CDS1229011812290337-
Transcript Sequence

Network for GWHGAAZE005698

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16135.6TDBD3093597.10E-14
PF00628.30PHD3764178.90E-08
PF01095.20Pectinesterase73010229.70E-67
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0030599molecular_functionpectinesterase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.817
SRR3591706second leaf17.729
SRR3591707mature leaf9.368
SRR3591708Shoot apex29.641
SRR3591709Stem23.242
SRR3591710White floral bud18.726
SRR3591711White flower25.549
SRR3591712Green floral bud19.283
SRR3591713Yellow flower11.888
SRP173429 SRR8316895Juvenile bud stage 16.802
SRR8316896Juvenile bud stage 19.284
SRR8316897Juvenile bud stage 11.998
SRR8316894Third green stage 8.127
SRR8316900Third green stage 16.741
SRR8316901Third green stage 15.284
SRR8316898Complete white stage 5.525
SRR8316899Complete white stage 18.362
SRR8316903Complete white stage 11.274
SRR8316902Silver flowering stage19.996
SRR8316904Silver flowering stage16.437
SRR8316905Silver flowering stage2.507
SRR8316906Gold flowering stage 5.708
SRR8316907Gold flowering stage 13.368
SRR8316908Gold flowering stage 7.584
SRP132670SRR6706286Control9.426
SRR6706287Light intensity 50%10.431
SRR6706288Light intensity 20%11.974
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.247
CNS0095593Slightly white alabastrum(diploid) 214.777
CNS0095594Slightly white alabastrum(diploid) 314.150
CNS0095595Whole white alabastrum(diploid) 212.253
CNS0095596Whole white alabastrum(diploid) 311.131
CNS0095597Whole white alabastrum(diploid) 411.228
CNS0095598Silvery flower (diploied) 117.148
CNS0095599Silvery flower (diploied) 213.184
CNS0095600Silvery flower (diploied) 314.999
CNS0095601Golden flower (diploid) 113.577
CNS0095602Golden flower (diploid) 29.263
CNS0095603Golden flower (diploid) 38.653
CNS0095604Slightly white alabastrum(tetraploid) 120.052
CNS0095605Slightly white alabastrum(tetraploid) 215.349
CNS0095606Slightly white alabastrum(tetraploid) 326.751
CNS0095607Whole white alabastrum(tetraploid) 112.130
CNS0095608Whole white alabastrum(tetraploid) 27.747
CNS0095609Whole white alabastrum(tetraploid) 315.399
CNS0095610Silvery flower (tetraploid) 131.638
CNS0095611Silvery flower (tetraploid) 211.131
CNS0095612Silvery flower (tetraploid) 39.853
CNS0095613Golden flower (tetraploid) 17.004
CNS0095614Golden flower (tetraploid) 29.958
CNS0095615Golden flower (tetraploid) 33.025
CRA001975CRR073297Stem 116.251
CRR073298Stem 215.989
CRR073299Stem 37.875
CRR073300Leaf 114.008
CRR073301Leaf 213.530
CRR073302Leaf 35.801
CRR073303Juvenile bud 16.685
CRR073304Juvenile bud 22.817
CRR073305Juvenile bud 38.618
CRR073306Third green 10.888
CRR073307Third green 21.815
CRR073308Third green 34.931
CRR073309Second white 10.838
CRR073310Second white 21.586
CRR073311Second white 31.423
CRR073312Silver flowering 10.298
CRR073313Silver flowering 20.427
CRR073314Silver flowering 30.695
CRR073315Gold flowering 13.223
CRR073316Gold flowering 27.696
CRR073317Gold flowering 32.751
CRR073318Tawny withering 18.950
CRR073319Tawny withering 29.484
CRR073320Tawny withering 310.870