Detail information of GWHGAAZE005702


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP15315.17.75509E-71unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V3F5|A0A068V3F5_COFCA3E-71Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313|EMBL:CDP15315.1}
TAIR10AT4G17900.16E-40PLATZ transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1238239212383261-
GWHAAZE00000002mRNA1238239212383261-
GWHAAZE00000002exon1238309012383261-
GWHAAZE00000002exon1238265012382829-
GWHAAZE00000002exon1238239212382541-
GWHAAZE00000002five_prime_UTR1238309312383261-
GWHAAZE00000002CDS1238309012383092-
GWHAAZE00000002CDS1238265012382829-
GWHAAZE00000002CDS1238239212382541-
Transcript Sequence

Network for GWHGAAZE005702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04640.15PLATZ631078.60E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPLATZ

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.221
SRR3591706second leaf19.331
SRR3591707mature leaf4.119
SRR3591708Shoot apex12.032
SRR3591709Stem25.185
SRR3591710White floral bud47.841
SRR3591711White flower23.053
SRR3591712Green floral bud14.420
SRR3591713Yellow flower38.935
SRP173429 SRR8316895Juvenile bud stage 15.970
SRR8316896Juvenile bud stage 26.791
SRR8316897Juvenile bud stage 8.341
SRR8316894Third green stage 9.090
SRR8316900Third green stage 15.670
SRR8316901Third green stage 13.101
SRR8316898Complete white stage 33.322
SRR8316899Complete white stage 23.135
SRR8316903Complete white stage 46.184
SRR8316902Silver flowering stage20.304
SRR8316904Silver flowering stage31.920
SRR8316905Silver flowering stage15.029
SRR8316906Gold flowering stage 55.223
SRR8316907Gold flowering stage 57.794
SRR8316908Gold flowering stage 55.136
SRP132670SRR6706286Control30.117
SRR6706287Light intensity 50%31.190
SRR6706288Light intensity 20%25.084
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.516
CNS0095593Slightly white alabastrum(diploid) 25.350
CNS0095594Slightly white alabastrum(diploid) 315.052
CNS0095595Whole white alabastrum(diploid) 24.899
CNS0095596Whole white alabastrum(diploid) 37.606
CNS0095597Whole white alabastrum(diploid) 47.528
CNS0095598Silvery flower (diploied) 18.091
CNS0095599Silvery flower (diploied) 210.982
CNS0095600Silvery flower (diploied) 334.828
CNS0095601Golden flower (diploid) 19.902
CNS0095602Golden flower (diploid) 221.028
CNS0095603Golden flower (diploid) 324.664
CNS0095604Slightly white alabastrum(tetraploid) 18.860
CNS0095605Slightly white alabastrum(tetraploid) 27.508
CNS0095606Slightly white alabastrum(tetraploid) 312.352
CNS0095607Whole white alabastrum(tetraploid) 111.639
CNS0095608Whole white alabastrum(tetraploid) 27.500
CNS0095609Whole white alabastrum(tetraploid) 313.026
CNS0095610Silvery flower (tetraploid) 118.557
CNS0095611Silvery flower (tetraploid) 213.217
CNS0095612Silvery flower (tetraploid) 324.922
CNS0095613Golden flower (tetraploid) 111.380
CNS0095614Golden flower (tetraploid) 212.381
CNS0095615Golden flower (tetraploid) 343.004
CRA001975CRR073297Stem 140.430
CRR073298Stem 237.953
CRR073299Stem 345.602
CRR073300Leaf 113.932
CRR073301Leaf 216.601
CRR073302Leaf 314.054
CRR073303Juvenile bud 116.160
CRR073304Juvenile bud 230.607
CRR073305Juvenile bud 315.336
CRR073306Third green 1105.619
CRR073307Third green 293.788
CRR073308Third green 386.354
CRR073309Second white 17.062
CRR073310Second white 222.358
CRR073311Second white 313.502
CRR073312Silver flowering 119.703
CRR073313Silver flowering 216.709
CRR073314Silver flowering 321.762
CRR073315Gold flowering 16.182
CRR073316Gold flowering 27.580
CRR073317Gold flowering 32.760
CRR073318Tawny withering 124.059
CRR073319Tawny withering 211.266
CRR073320Tawny withering 319.677