Gene detail

Detail information of GWHGAAZE005705

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002309107.1	0	hypothetical protein POPTR_0006s09580g [Populus trichocarpa]
Swissprot	tr\|P37122\|C76A2_SOLME	0	Cytochrome P450 76A2
trEMBL	tr\|B9HCH6\|B9HCH6_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE92630.1}
TAIR10	AT3G52970.1	3E-127	cytochrome P450, family 76, subfamily G, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	12413778	12416021	-
GWHAAZE00000002	mRNA	12413778	12416021	-
GWHAAZE00000002	exon	12413778	12414401	-
GWHAAZE00000002	exon	12415122	12416021	-
GWHAAZE00000002	CDS	12415122	12416021	-
GWHAAZE00000002	CDS	12413778	12414401	-

Transcript Sequence
>GWHTAAZE005713 ATGGACTTCGCTTACACCTTTCTCATTTGTTCCATCATCACTATAACATCAGCCGTTTTCCTCCTCCACCGCCGCAGCACCAACCACCGCCTACCACCAGGACCACCGGCATGGCCGGTATTCGGTCACACCTTCAACCTCGGCTCAATGCCCCACCGAACCCTAACCGGCCTCAAACAAATATACGGTCCCGTAATTTGGCTAAAAATCGGCTCAGTTAACACCATGGCTATTCTGTCGGCTAAAGCGGCCACCGAGCTGTTCAAAAACCACGACCTCTCGTTCGCGGATCGCACGGTGATCGAGACCATGCGATCCAACGACTACTGCGAGGGATCGTTAGCCCTCGCCCCTTACGGGGCCTACTGGCGCGTGCTTCGACGCATATGTACGGTGGAAATGATTGTGGCGAAAAGGATAAACGCAACGGTGTCGGTTAGGCGAAAATGTATAGATGACATGGTGGTGTGGATAGAGAGGGAGGCGGGTGGGGGGAAGGAGGAGCGTGGGGTTAACGTGGCGAGGTATGTGTTTTTGGCGTCGTTTAATATGCTGGGGAATTTGATGCTGTCGAGGGATTTGGTGGACCCGGATTCGAAGGTGGGGTCGGAGTTTTTGGAAGGGATGATGGGGTTGATGGAGTGGACTGGGCACCCGAATGTATCGGATCTGTTTCCTTGGCTGAGGTGGTTTGATGTGCAGGGTTTGAGGAAGAGGATGGATAGGGACATGGGGAAAGCGTTGGGGATTGCAGCGGGTTTTGTGAAGGAGCGCGTCAAGGAGCGTTGTAACGGCGGGGAGAAAAGGACCGATTTTTTGGAGGTGTTGCTTGACTTTGAGGGCACCGGGAAGGATGAACCACAGAAATTAGCTGAACGGGACGTCAATATATTAATACTGGAAATATTTCAAGCCGGTACAGAAACAACTAGCAGTACCACTGAATGGGCAATGACTGAGCTCCTCTGCAACCCTGAAACAATGACCAAGGTTAAGGCTGAGCTTGTGTCCGTTGTTGGACCTAATAGGAAATTTGAAGAAAGTGACATAGACAATTTGCCATATTTGCAAGCTGTGTTAAAAGAAACGCTGCGTCTACATCCTCCAATTCCATTTCTCGTTCCACGAAAGGCTATTCAAGATACTAACTACATGGGGTATAACATACCCAAAAACACGCAGTTGTTTGTAAACGTTTGGGCAATCGGTAGAGATGAAGAATGTTGGGATGACCCATTATCCTTCAAACCCGAAAGGTTTTTAGGGTCGAAAATCGATTTTAAGGGCCAACATTTTGAATTCATACCATTTGGTGCTGGCCGAAGAATGTGTGCAGGGGTTCCATTAGGTCACCGTATGCTACACTTTGTACTGGGCTCGTTGCTTCATGAATTTGACTGGAAGCTAGAAAATCATATTACACCAGAGAGCATGGATATGAAAGATAAAATGGGTGTAACAGTGAGAAAATTAGAATCACTAATAGCAATCCCAAAAAAGTTGTATGCTGTTTCAGTGAAATGA

Network for GWHGAAZE005705

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	32	485	1.70E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.649
	SRR3591706	second leaf	0.554
	SRR3591707	mature leaf	0.107
	SRR3591708	Shoot apex	0.966
	SRR3591709	Stem	0.069
	SRR3591710	White floral bud	5.792
	SRR3591711	White flower	1.875
	SRR3591712	Green floral bud	3.447
	SRR3591713	Yellow flower	0.186
SRP173429	SRR8316895	Juvenile bud stage	0.990
	SRR8316896	Juvenile bud stage	3.143
	SRR8316897	Juvenile bud stage	1.645
	SRR8316894	Third green stage	1.547
	SRR8316900	Third green stage	3.882
	SRR8316901	Third green stage	3.731
	SRR8316898	Complete white stage	0.623
	SRR8316899	Complete white stage	1.688
	SRR8316903	Complete white stage	1.035
	SRR8316902	Silver flowering stage	1.866
	SRR8316904	Silver flowering stage	3.900
	SRR8316905	Silver flowering stage	2.399
	SRR8316906	Gold flowering stage	4.259
	SRR8316907	Gold flowering stage	5.296
	SRR8316908	Gold flowering stage	5.814
SRP132670	SRR6706286	Control	2.277
	SRR6706287	Light intensity 50%	1.978
	SRR6706288	Light intensity 20%	1.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.812
	CNS0095593	Slightly white alabastrum(diploid) 2	5.534
	CNS0095594	Slightly white alabastrum(diploid) 3	12.344
	CNS0095595	Whole white alabastrum(diploid) 2	5.856
	CNS0095596	Whole white alabastrum(diploid) 3	7.128
	CNS0095597	Whole white alabastrum(diploid) 4	8.079
	CNS0095598	Silvery flower (diploied) 1	1.793
	CNS0095599	Silvery flower (diploied) 2	0.334
	CNS0095600	Silvery flower (diploied) 3	2.240
	CNS0095601	Golden flower (diploid) 1	0.596
	CNS0095602	Golden flower (diploid) 2	1.590
	CNS0095603	Golden flower (diploid) 3	1.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.442
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.432
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.216
	CNS0095610	Silvery flower (tetraploid) 1	0.892
	CNS0095611	Silvery flower (tetraploid) 2	0.916
	CNS0095612	Silvery flower (tetraploid) 3	1.468
	CNS0095613	Golden flower (tetraploid) 1	0.531
	CNS0095614	Golden flower (tetraploid) 2	0.542
	CNS0095615	Golden flower (tetraploid) 3	0.063
CRA001975	CRR073297	Stem 1	1.603
	CRR073298	Stem 2	1.741
	CRR073299	Stem 3	1.839
	CRR073300	Leaf 1	1.666
	CRR073301	Leaf 2	1.008
	CRR073302	Leaf 3	0.802
	CRR073303	Juvenile bud 1	0.278
	CRR073304	Juvenile bud 2	0.692
	CRR073305	Juvenile bud 3	0.252
	CRR073306	Third green 1	4.575
	CRR073307	Third green 2	2.751
	CRR073308	Third green 3	5.110
	CRR073309	Second white 1	1.481
	CRR073310	Second white 2	0.821
	CRR073311	Second white 3	1.751
	CRR073312	Silver flowering 1	1.136
	CRR073313	Silver flowering 2	0.711
	CRR073314	Silver flowering 3	1.139
	CRR073315	Gold flowering 1	0.484
	CRR073316	Gold flowering 2	0.144
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.989
	CRR073319	Tawny withering 2	0.340
	CRR073320	Tawny withering 3	1.672