Gene detail

Detail information of GWHGAAZE005709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG02039.1	0	Polyadenylate-binding 2 -like protein [Gossypium arboreum]
Swissprot	tr\|Q9ZQA8\|PABP7_ARATH	0	Polyadenylate-binding protein 7
trEMBL	tr\|A0A067K2I6\|A0A067K2I6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP29218.1}
TAIR10	AT2G36660.1	3E-169	poly(A) binding protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	12476328	12482756	+
GWHAAZE00000002	mRNA	12476328	12482756	+
GWHAAZE00000002	exon	12476328	12476526	+
GWHAAZE00000002	exon	12477265	12477383	+
GWHAAZE00000002	exon	12477496	12477689	+
GWHAAZE00000002	exon	12477845	12478104	+
GWHAAZE00000002	exon	12478199	12478305	+
GWHAAZE00000002	exon	12478399	12478588	+
GWHAAZE00000002	exon	12480459	12480754	+
GWHAAZE00000002	exon	12480902	12481054	+
GWHAAZE00000002	exon	12481570	12481785	+
GWHAAZE00000002	exon	12482553	12482756	+
GWHAAZE00000002	CDS	12476328	12476526	+
GWHAAZE00000002	CDS	12477265	12477383	+
GWHAAZE00000002	CDS	12477496	12477689	+
GWHAAZE00000002	CDS	12477845	12478104	+
GWHAAZE00000002	CDS	12478199	12478305	+
GWHAAZE00000002	CDS	12478399	12478588	+
GWHAAZE00000002	CDS	12480459	12480754	+
GWHAAZE00000002	CDS	12480902	12481054	+
GWHAAZE00000002	CDS	12481570	12481785	+
GWHAAZE00000002	CDS	12482553	12482756	+

Transcript Sequence
>GWHTAAZE005717 ATGGCGGTTCCTCCTCCCTCGGTCCCCGCCGCTCCGGCGTCACTCTACGTCGGAGACCTTCACGATGACGTGACCGATGCTCAGCTCTTCCACGCCTTCGCGGCGTTCAAGAGTCTCGCCTCCGTTCGCATCTGCCGTGACTCCTCCACCGGCCGCTCCCTCTGTTATGGCTACGTCAACTTCATTTCTCCTCAAGACGCTGTCGATGCTATTGAGGTGAAAAATCACTCAACACTCAATGGGAAAGTGATAAGGGTTATGTGGTCGCTTCGAAATCCTGATTTTAGAAAAAGTGGAATTGGAAATGTGTTTGTCAAGAATTTGAGCGAATCCGTAGATAATGTGAAGCTTCAAGAATTGTTTCAGAAGTTTGGGAATATTTTATCTTGCAAAGTTGTAATGTTTGAGGATGGAAAGAGTAAAGGATACGGCTTTGTGCAGTTTGAGTCCGAAGAATCTGCTAATACTGCCATTGAGAATCTGAATGGCACCACTGTTGAAGGCAAGCAGATGTATGTTGGTAAGTTTGTGAAGAAAAGTGACCGGGCGTTGCCAAGTCCTGATGCTAAGTACACAAATCTTTACATTAAGAATTTGGATCCAGATGTCACAGAAGAATGTCTCAAGGATAAGTTCTCTGCTTTTGGAAAAATTGTTAGCTTGGCTATCTCGAAGGATGATAGTGGGGCCTCGAGAGGTTTTGGTTTTGTGAATTTTGATAACCCAGATGATGCTAGGCAGGCAATGGAAGCTATGAATGGGTTGCTAATTGGCTCAAAGGTTCTATATGTAGCTAGGGCACAGAAGAAAGCTGAGCGCGAGCAAATTTTGCGTCGCCAGTTTGAGGACAAAAGGAAGGAGCAAATCTTGAAATACCAGGGTTCAAATGTCTACGTTAAGAACATTGACGATGATATCACTGATGAGGAGCTCCGAGAACACTTTAGCCAATGCGGAACCATCACTTCTGCTAGACTTATGCGAGATGACAAAGGAATGAGTAAGGGATTTGGATTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACCTTCCACGGTTACATGTTTCATCAAAAGCCACTATATGTTGCCATTGCTCAAAGAAAAGAGGAGCGACTAGCACAATTACAGATTCAGTGTGCACATCGTATGGCTGGACTAGCAGCAGGGCCATCGGCTGTTATTCCTGGCGGCTATCCTCCTCTTTACTACACTGCTCCTCCGGGTGTTGTTTCACAAGTACCTCCTCGCCCAGGCCTTATGTATCAGCCTCTTGGTTTGAGGCCAGGATGGGGACCTAATGGATTTGCTCCTCCAACCAGACCAGCTTTTCAACCACCCACTCTTCCTTTAATTTCCAACTCTCCTAGACAACCTAGGCAAAACAGGGGAAGGATGAACTGTCATATGCAACCACAGGGAGGTGTTCAGGCTGTTTCATACACGCCACATTCTCAACAGGCCCCTCATTCATTGGCTTCATCTAAAGATACAAACAATCAGCAGAGGGCTGGACAGGTAAAGTATTTGCCAAATGGGCAGCTTAACAAAGGAAGTGGAGGAGTATCATCTGCTGCTGCAGCTGCTTCAAATTCAGTTGTTGGATCTGTTGGGGCTGCTGAGGGATCAGAAATTTTGAGTAGCATGCTTGCTGCTGCCTCCCCTGAGCAGCAGAAACAGATACTCGGGGAACGACTCTACCCCCTTGTTAACCAACACAAGCCTGAGCTAGCTGCAAAGATAACAGGAATGCTATTGGAGATGGACAACTCAGAATTGTTGCTGTTATTGGAGTCACCAGAACAACTGGCAATCAAGGTGGAGGAAGCTGTGCAGGTACTCAAACTGTCCAAGGCTAAAGTATCGAGCCAAGATTCACTTCATACAACAAGTACTTACCTATCGGCCGAGCTTGCAGTTAACTGA

Network for GWHGAAZE005709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	15	85	5.60E-14
PF00076.23	RRM_1	103	171	3.10E-21
PF00076.23	RRM_1	194	262	1.70E-21
PF00076.23	RRM_1	297	365	2.40E-20
PF00658.19	PABP	552	618	1.90E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.306
	SRR3591706	second leaf	2.034
	SRR3591707	mature leaf	0.672
	SRR3591708	Shoot apex	7.070
	SRR3591709	Stem	0.805
	SRR3591710	White floral bud	6.882
	SRR3591711	White flower	2.153
	SRR3591712	Green floral bud	28.772
	SRR3591713	Yellow flower	0.387
SRP173429	SRR8316895	Juvenile bud stage	15.126
	SRR8316896	Juvenile bud stage	45.704
	SRR8316897	Juvenile bud stage	17.039
	SRR8316894	Third green stage	14.495
	SRR8316900	Third green stage	33.399
	SRR8316901	Third green stage	35.247
	SRR8316898	Complete white stage	0.234
	SRR8316899	Complete white stage	1.136
	SRR8316903	Complete white stage	0.345
	SRR8316902	Silver flowering stage	0.164
	SRR8316904	Silver flowering stage	0.227
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.034
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.092
SRP132670	SRR6706286	Control	15.505
	SRR6706287	Light intensity 50%	14.540
	SRR6706288	Light intensity 20%	13.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.783
	CNS0095593	Slightly white alabastrum(diploid) 2	12.897
	CNS0095594	Slightly white alabastrum(diploid) 3	29.580
	CNS0095595	Whole white alabastrum(diploid) 2	18.378
	CNS0095596	Whole white alabastrum(diploid) 3	26.493
	CNS0095597	Whole white alabastrum(diploid) 4	18.077
	CNS0095598	Silvery flower (diploied) 1	1.200
	CNS0095599	Silvery flower (diploied) 2	2.696
	CNS0095600	Silvery flower (diploied) 3	0.999
	CNS0095601	Golden flower (diploid) 1	1.353
	CNS0095602	Golden flower (diploid) 2	1.581
	CNS0095603	Golden flower (diploid) 3	1.398
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.274
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.216
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.795
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.534
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.650
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.503
	CNS0095610	Silvery flower (tetraploid) 1	0.410
	CNS0095611	Silvery flower (tetraploid) 2	1.208
	CNS0095612	Silvery flower (tetraploid) 3	1.336
	CNS0095613	Golden flower (tetraploid) 1	0.094
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.496
CRA001975	CRR073297	Stem 1	22.345
	CRR073298	Stem 2	17.545
	CRR073299	Stem 3	19.512
	CRR073300	Leaf 1	14.963
	CRR073301	Leaf 2	18.488
	CRR073302	Leaf 3	12.534
	CRR073303	Juvenile bud 1	9.780
	CRR073304	Juvenile bud 2	7.253
	CRR073305	Juvenile bud 3	0.942
	CRR073306	Third green 1	2.072
	CRR073307	Third green 2	3.344
	CRR073308	Third green 3	1.312
	CRR073309	Second white 1	0.044
	CRR073310	Second white 2	0.504
	CRR073311	Second white 3	0.226
	CRR073312	Silver flowering 1	1.847
	CRR073313	Silver flowering 2	3.205
	CRR073314	Silver flowering 3	0.433
	CRR073315	Gold flowering 1	2.664
	CRR073316	Gold flowering 2	1.416
	CRR073317	Gold flowering 3	1.341
	CRR073318	Tawny withering 1	2.090
	CRR073319	Tawny withering 2	3.097
	CRR073320	Tawny withering 3	2.473