Detail information of GWHGAAZE005718


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284049.10PREDICTED: E3 ubiquitin-protein ligase UPL7 isoform X1 [Vitis vinifera]
Swissprottr|Q9SCQ2|UPL7_ARATH0E3 ubiquitin-protein ligase UPL7
trEMBLtr|D7TIY3|D7TIY3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI30209.3}
TAIR10AT3G53090.20ubiquitin-protein ligase 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1254896812559056-
GWHAAZE00000002mRNA1254896812559056-
GWHAAZE00000002exon1255903312559056-
GWHAAZE00000002exon1255867112558793-
GWHAAZE00000002exon1255713412557374-
GWHAAZE00000002exon1255322312553815-
GWHAAZE00000002exon1255018112551134-
GWHAAZE00000002exon1254976912550083-
GWHAAZE00000002exon1254896812549069-
GWHAAZE00000002CDS1255903312559056-
GWHAAZE00000002CDS1255867112558793-
GWHAAZE00000002CDS1255713412557374-
GWHAAZE00000002CDS1255322312553815-
GWHAAZE00000002CDS1255018112551134-
GWHAAZE00000002CDS1254976912550083-
GWHAAZE00000002CDS1254896812549069-
Transcript Sequence

Network for GWHGAAZE005718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10588UBE3B Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.280
SRR3591706second leaf5.697
SRR3591707mature leaf5.827
SRR3591708Shoot apex5.911
SRR3591709Stem12.151
SRR3591710White floral bud8.847
SRR3591711White flower9.032
SRR3591712Green floral bud7.851
SRR3591713Yellow flower8.487
SRP173429 SRR8316895Juvenile bud stage 3.805
SRR8316896Juvenile bud stage 5.670
SRR8316897Juvenile bud stage 2.570
SRR8316894Third green stage 3.507
SRR8316900Third green stage 7.413
SRR8316901Third green stage 6.016
SRR8316898Complete white stage 3.282
SRR8316899Complete white stage 8.051
SRR8316903Complete white stage 5.207
SRR8316902Silver flowering stage3.006
SRR8316904Silver flowering stage4.324
SRR8316905Silver flowering stage1.418
SRR8316906Gold flowering stage 6.172
SRR8316907Gold flowering stage 6.409
SRR8316908Gold flowering stage 7.137
SRP132670SRR6706286Control4.318
SRR6706287Light intensity 50%4.801
SRR6706288Light intensity 20%4.657
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.642
CNS0095593Slightly white alabastrum(diploid) 22.562
CNS0095594Slightly white alabastrum(diploid) 32.442
CNS0095595Whole white alabastrum(diploid) 22.496
CNS0095596Whole white alabastrum(diploid) 32.858
CNS0095597Whole white alabastrum(diploid) 42.578
CNS0095598Silvery flower (diploied) 14.140
CNS0095599Silvery flower (diploied) 23.453
CNS0095600Silvery flower (diploied) 36.775
CNS0095601Golden flower (diploid) 13.856
CNS0095602Golden flower (diploid) 26.738
CNS0095603Golden flower (diploid) 36.085
CNS0095604Slightly white alabastrum(tetraploid) 14.015
CNS0095605Slightly white alabastrum(tetraploid) 22.881
CNS0095606Slightly white alabastrum(tetraploid) 36.817
CNS0095607Whole white alabastrum(tetraploid) 13.742
CNS0095608Whole white alabastrum(tetraploid) 22.510
CNS0095609Whole white alabastrum(tetraploid) 35.711
CNS0095610Silvery flower (tetraploid) 15.757
CNS0095611Silvery flower (tetraploid) 25.748
CNS0095612Silvery flower (tetraploid) 36.966
CNS0095613Golden flower (tetraploid) 13.294
CNS0095614Golden flower (tetraploid) 26.003
CNS0095615Golden flower (tetraploid) 36.773
CRA001975CRR073297Stem 14.865
CRR073298Stem 23.951
CRR073299Stem 32.997
CRR073300Leaf 14.002
CRR073301Leaf 23.277
CRR073302Leaf 33.428
CRR073303Juvenile bud 13.426
CRR073304Juvenile bud 21.911
CRR073305Juvenile bud 33.016
CRR073306Third green 11.412
CRR073307Third green 21.201
CRR073308Third green 31.086
CRR073309Second white 11.707
CRR073310Second white 22.078
CRR073311Second white 33.053
CRR073312Silver flowering 11.925
CRR073313Silver flowering 22.033
CRR073314Silver flowering 31.660
CRR073315Gold flowering 11.384
CRR073316Gold flowering 22.180
CRR073317Gold flowering 30.985
CRR073318Tawny withering 13.973
CRR073319Tawny withering 22.362
CRR073320Tawny withering 32.662