Gene detail

Detail information of GWHGAAZE005750

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAB40749.1	1.2128E-138	starch branching enzyme II [Solanum tuberosum]
Swissprot	tr\|Q41058\|GLGB1_PEA	6E-123	1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|Q9XGA9\|Q9XGA9_SOLTU	5E-139	Starch branching enzyme II {ECO:0000313\|EMBL:CAB40749.1} (Precursor; Fragment)
TAIR10	AT2G36390.1	3E-103	starch branching enzyme 2.1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13195305	13203564	-
GWHAAZE00000002	mRNA	13195305	13203564	-
GWHAAZE00000002	exon	13203471	13203564	-
GWHAAZE00000002	exon	13201726	13201883	-
GWHAAZE00000002	exon	13199997	13200226	-
GWHAAZE00000002	exon	13199316	13199414	-
GWHAAZE00000002	exon	13198253	13198295	-
GWHAAZE00000002	exon	13197808	13197867	-
GWHAAZE00000002	exon	13196892	13196972	-
GWHAAZE00000002	exon	13195498	13195614	-
GWHAAZE00000002	exon	13195305	13195388	-
GWHAAZE00000002	CDS	13203471	13203564	-
GWHAAZE00000002	CDS	13201726	13201883	-
GWHAAZE00000002	CDS	13199997	13200226	-
GWHAAZE00000002	CDS	13199316	13199414	-
GWHAAZE00000002	CDS	13198253	13198295	-
GWHAAZE00000002	CDS	13197808	13197867	-
GWHAAZE00000002	CDS	13196892	13196972	-
GWHAAZE00000002	CDS	13195498	13195614	-
GWHAAZE00000002	CDS	13195305	13195388	-

Transcript Sequence
>GWHTAAZE005758 ATGGTCTATACTCTCCCCGGGGTTCGTTTGCCTACTGCTCCGTCGGTCTACAAGTCTACTCGATCGAGCTTTCACGGTGATCGGAGCGATACTGGGAAGATTTTTTATGGGAGGCCTTCTTATGACTGTAAATCCACATCTTTTGTGGTTGCTGCATCTGAGAATGTCCCTGTTCCAAGCAGCCAAAGTAATTATCCTTCATCATCGTCAGAGCAATTGGAAGCTGCTGGCATGGCTTCAGAAGATCCCCAAGTATTTCAGAATGATGATAGTCCTGTGGCACATGCTGACAGCATAATGGATGATGAAAATTCTTTAGAACCAATGAGTGGTCTAAGTGAGGATGGCAAAGCTAAGGGTGCAGATATAAGTAAAGAAAGTGATAGGGTTAGACAAAGGTCTATTCCTCCACCTGGAGCTGGGCAGAAAATATTCGAAATAGATCCATTTCTGAGTAGTTATCGTGAACATCTTGATTATCGATATGGACACTACAAAAAAATGCGAGAGGCAATTAATAAGAGCGAAGGAGGGCTGGAAGTGTTTTCTCGCGGTTATGAGAAGTTTGGTTTCATCCGCAGTGCCACAGGTATTACCTACAGGGAGTGGGCTCCAGGTGCTAAGTCAGCTGCCCTAATTGGTGACTTCAACAATTGGAATCCTAATGCTGATATAATGACCCGGAATGAATTTGGAGTGTGGGAGGTTTTTTTGCCCAACAATGTTGATGGTTCTCCACCGATTCCCCATGGCTCACAAGTAAAGATACGTATGGGGACTCCGTCTGGCATTAAAGATTCCATTCCTGCCTGGATTAAGTTCTCTACACAGGCTCCTGGTGAAATCCCTTTTAATGGAATATACTATGATCCACCAGAAGAGGACAAGTATGTATTTCAACACCCCCGCCCGAAGAAGCCAAAATCACTTAGGATTTACGAGGCACATGTCGGAATGAGCAGTACG

Network for GWHGAAZE005750

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.19	CBM_48	188	271	5.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00700	GBE1, glgB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.474
	SRR3591706	second leaf	0.344
	SRR3591707	mature leaf	0.715
	SRR3591708	Shoot apex	0.381
	SRR3591709	Stem	1.675
	SRR3591710	White floral bud	2.052
	SRR3591711	White flower	0.713
	SRR3591712	Green floral bud	3.920
	SRR3591713	Yellow flower	0.202
SRP173429	SRR8316895	Juvenile bud stage	1.723
	SRR8316896	Juvenile bud stage	3.837
	SRR8316897	Juvenile bud stage	1.453
	SRR8316894	Third green stage	1.985
	SRR8316900	Third green stage	2.980
	SRR8316901	Third green stage	3.810
	SRR8316898	Complete white stage	0.039
	SRR8316899	Complete white stage	0.266
	SRR8316903	Complete white stage	0.250
	SRR8316902	Silver flowering stage	0.054
	SRR8316904	Silver flowering stage	0.262
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.437
	SRR6706287	Light intensity 50%	2.163
	SRR6706288	Light intensity 20%	2.544
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.272
	CNS0095593	Slightly white alabastrum(diploid) 2	0.952
	CNS0095594	Slightly white alabastrum(diploid) 3	2.553
	CNS0095595	Whole white alabastrum(diploid) 2	1.852
	CNS0095596	Whole white alabastrum(diploid) 3	1.905
	CNS0095597	Whole white alabastrum(diploid) 4	2.867
	CNS0095598	Silvery flower (diploied) 1	1.325
	CNS0095599	Silvery flower (diploied) 2	1.109
	CNS0095600	Silvery flower (diploied) 3	0.308
	CNS0095601	Golden flower (diploid) 1	1.167
	CNS0095602	Golden flower (diploid) 2	0.378
	CNS0095603	Golden flower (diploid) 3	0.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.473
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.558
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.186
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.587
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.724
	CNS0095610	Silvery flower (tetraploid) 1	0.203
	CNS0095611	Silvery flower (tetraploid) 2	0.055
	CNS0095612	Silvery flower (tetraploid) 3	0.022
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.401
	CNS0095615	Golden flower (tetraploid) 3	0.067
CRA001975	CRR073297	Stem 1	1.149
	CRR073298	Stem 2	0.685
	CRR073299	Stem 3	0.536
	CRR073300	Leaf 1	2.092
	CRR073301	Leaf 2	0.599
	CRR073302	Leaf 3	0.332
	CRR073303	Juvenile bud 1	0.217
	CRR073304	Juvenile bud 2	0.333
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.092
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.505
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.195
	CRR073316	Gold flowering 2	0.074
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.141
	CRR073319	Tawny withering 2	1.185
	CRR073320	Tawny withering 3	0.059