Gene detail

Detail information of GWHGAAZE005757

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006481816.1	6.32719E-55	PREDICTED: uncharacterized protein LOC102610701 isoform X1 [Citrus sinensis]
trEMBL	tr\|V4S7N9\|V4S7N9_9ROSI	3E-48	Uncharacterized protein {ECO:0000313\|EMBL:ESR43498.1} (Fragment)
TAIR10	AT1G19490.1	5E-11	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13318469	13322251	+
GWHAAZE00000002	mRNA	13318469	13322251	+
GWHAAZE00000002	exon	13318469	13318678	+
GWHAAZE00000002	exon	13319693	13319898	+
GWHAAZE00000002	exon	13319987	13320020	+
GWHAAZE00000002	exon	13321336	13321401	+
GWHAAZE00000002	exon	13321478	13322251	+
GWHAAZE00000002	CDS	13318469	13318678	+
GWHAAZE00000002	CDS	13319693	13319898	+
GWHAAZE00000002	CDS	13319987	13320020	+
GWHAAZE00000002	CDS	13321336	13321401	+
GWHAAZE00000002	CDS	13321478	13322251	+

Transcript Sequence
>GWHTAAZE005765 ATGGCACCACCGACTAGGGCAACGAATTGTACATCAGAAGAAGAAGAAGAGCCGCTGGTGAGGTTCGAGTTGGAAGCGGCCGAAGCTTTGACTGGATTAGCTTCCGGTGAAGTGTGCCCGAACCGAGCCGAAGAAATGACTCGGCGAGTCGAGAACGAGATTTCTGCCGGAGAATCGGTGCCAATAATAATGTCCTCGGATCTCGATCAGGATTGGGGAGTAGTTACTGTTCCTCAGCATTTTGGAAAGAGATGCAATATCATTACAACAAAATCGGTAAAGGCTAAACAGGATAATGCTCAACTTAAATCAAATCCTACTTTTGCTACAACTTACACATCATCTGGTGGCAGCAAGTCAAGAAAGAATTTGACAGAGGCACTAAAGTTTCCAATTTCCATTAAAAAAAAATTTCCAGAATCAGCTAGGCAGACAATTCGTCGGAGGCAGGAAAAGGAGTTAGCAGAGAAAGAGTATGATTTGTTGCGGAGCACAAATGAATGTTTAAAAGCACAGATGACTAAGATAGTGAAGGCTGAAGAAGAGGAAATTCAAGTTGAATCCACATCAACAACCTATGTTGATACATCTACTTCTCCATCCACAAGTTGTCCCATTTTCATTTACAATAATCCATCTTTTTTGCCATTTCTGTGGCCTCCCATAGTTCAACCTTCAGATTCAGTCCAATCGCAATATGGCCCGCAAAGTGCCCTCTCAACAGAGTCATTTCGTGAACGAGTAAATCCTACAAATACTAGCGTCCCACAAAGTGCCGTATATTTAGTGCCATACCCTTGGCCGTTCCCTCTTCCCAATCATCACAGTAGTGGACCCCACCTTCAATCCAGTCTAATAAAAGATCAACAGGATGGAACTTCATCAAATAACCTATCAACTACTAGCTCATCTTCAAGGCCAATAGTTCATTTACAGAACCAGCACTCATTGAGACTCGTGAACAACAAAACAGAACCTTCAATAGAAGCCATACCTGCAAATGATATTCACGAGAATCCTTTTGGGTTCCAACCGGATGGAGGTGGACTGTGCCCCAGAGGAACGGACCTTGTACCTGTACCATTGAGTTGTGTTAGTGCTGCTTCGACCATCGAATATAAGAGGAATCCTCGACCAGAACCTGCTTGTTATGTTAGTAGAGCTAGTCAGCCTGCAGAGTGCGATATTATAAAAGGACCAAAAAAGGAAGGGGATGCAGTTACAGCTGCCGATGCTAGGAAGAGGAGGAAAGAACTTAAAAGGTTGAAGCATCTTCACCCCCGGTATTGA

Network for GWHGAAZE005757

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0181

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.330
	SRR3591706	second leaf	1.420
	SRR3591707	mature leaf	2.826
	SRR3591708	Shoot apex	6.374
	SRR3591709	Stem	13.584
	SRR3591710	White floral bud	3.617
	SRR3591711	White flower	8.069
	SRR3591712	Green floral bud	2.844
	SRR3591713	Yellow flower	4.883
SRP173429	SRR8316895	Juvenile bud stage	43.965
	SRR8316896	Juvenile bud stage	62.191
	SRR8316897	Juvenile bud stage	46.645
	SRR8316894	Third green stage	2.879
	SRR8316900	Third green stage	4.254
	SRR8316901	Third green stage	10.394
	SRR8316898	Complete white stage	2.968
	SRR8316899	Complete white stage	9.673
	SRR8316903	Complete white stage	4.274
	SRR8316902	Silver flowering stage	3.303
	SRR8316904	Silver flowering stage	3.696
	SRR8316905	Silver flowering stage	2.491
	SRR8316906	Gold flowering stage	6.784
	SRR8316907	Gold flowering stage	6.973
	SRR8316908	Gold flowering stage	6.474
SRP132670	SRR6706286	Control	6.787
	SRR6706287	Light intensity 50%	5.838
	SRR6706288	Light intensity 20%	3.814
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.305
	CNS0095593	Slightly white alabastrum(diploid) 2	7.518
	CNS0095594	Slightly white alabastrum(diploid) 3	11.745
	CNS0095595	Whole white alabastrum(diploid) 2	7.922
	CNS0095596	Whole white alabastrum(diploid) 3	2.658
	CNS0095597	Whole white alabastrum(diploid) 4	5.796
	CNS0095598	Silvery flower (diploied) 1	13.128
	CNS0095599	Silvery flower (diploied) 2	47.752
	CNS0095600	Silvery flower (diploied) 3	14.356
	CNS0095601	Golden flower (diploid) 1	31.174
	CNS0095602	Golden flower (diploid) 2	21.394
	CNS0095603	Golden flower (diploid) 3	21.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.631
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.711
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.417
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.730
	CNS0095610	Silvery flower (tetraploid) 1	6.388
	CNS0095611	Silvery flower (tetraploid) 2	5.542
	CNS0095612	Silvery flower (tetraploid) 3	0.510
	CNS0095613	Golden flower (tetraploid) 1	4.908
	CNS0095614	Golden flower (tetraploid) 2	6.724
	CNS0095615	Golden flower (tetraploid) 3	2.517
CRA001975	CRR073297	Stem 1	5.425
	CRR073298	Stem 2	5.894
	CRR073299	Stem 3	2.241
	CRR073300	Leaf 1	6.949
	CRR073301	Leaf 2	14.882
	CRR073302	Leaf 3	2.148
	CRR073303	Juvenile bud 1	3.083
	CRR073304	Juvenile bud 2	2.976
	CRR073305	Juvenile bud 3	4.012
	CRR073306	Third green 1	2.167
	CRR073307	Third green 2	2.587
	CRR073308	Third green 3	1.172
	CRR073309	Second white 1	0.278
	CRR073310	Second white 2	1.475
	CRR073311	Second white 3	1.244
	CRR073312	Silver flowering 1	0.246
	CRR073313	Silver flowering 2	1.613
	CRR073314	Silver flowering 3	0.603
	CRR073315	Gold flowering 1	0.263
	CRR073316	Gold flowering 2	0.375
	CRR073317	Gold flowering 3	0.130
	CRR073318	Tawny withering 1	3.832
	CRR073319	Tawny withering 2	7.607
	CRR073320	Tawny withering 3	2.226