Detail information of GWHGAAZE005761


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP15396.14.20075E-13unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V401|A0A068V401_COFCA2E-13Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313|EMBL:CDP15396.1}
TAIR10AT3G10070.10.00001TBP-associated factor 12

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1339343113395483-
GWHAAZE00000002mRNA1339343113395483-
GWHAAZE00000002exon1339343113393496-
GWHAAZE00000002exon1339419513394398-
GWHAAZE00000002exon1339473613394839-
GWHAAZE00000002exon1339536613395483-
GWHAAZE00000002CDS1339536613395483-
GWHAAZE00000002CDS1339473613394839-
GWHAAZE00000002CDS1339419513394398-
GWHAAZE00000002CDS1339343113393496-
Transcript Sequence

Network for GWHGAAZE005761

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03126TAF12 Basal transcription factors map03022

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.383
SRR3591706second leaf12.832
SRR3591707mature leaf15.932
SRR3591708Shoot apex21.825
SRR3591709Stem11.754
SRR3591710White floral bud7.539
SRR3591711White flower7.736
SRR3591712Green floral bud9.310
SRR3591713Yellow flower5.758
SRP173429 SRR8316895Juvenile bud stage 9.365
SRR8316896Juvenile bud stage 13.138
SRR8316897Juvenile bud stage 7.342
SRR8316894Third green stage 7.988
SRR8316900Third green stage 9.123
SRR8316901Third green stage 9.884
SRR8316898Complete white stage 2.097
SRR8316899Complete white stage 11.441
SRR8316903Complete white stage 6.813
SRR8316902Silver flowering stage2.996
SRR8316904Silver flowering stage5.255
SRR8316905Silver flowering stage2.023
SRR8316906Gold flowering stage 5.874
SRR8316907Gold flowering stage 4.964
SRR8316908Gold flowering stage 9.248
SRP132670SRR6706286Control5.063
SRR6706287Light intensity 50%7.160
SRR6706288Light intensity 20%7.740
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.213
CNS0095593Slightly white alabastrum(diploid) 26.068
CNS0095594Slightly white alabastrum(diploid) 35.607
CNS0095595Whole white alabastrum(diploid) 23.221
CNS0095596Whole white alabastrum(diploid) 33.560
CNS0095597Whole white alabastrum(diploid) 43.492
CNS0095598Silvery flower (diploied) 17.112
CNS0095599Silvery flower (diploied) 28.330
CNS0095600Silvery flower (diploied) 35.018
CNS0095601Golden flower (diploid) 17.614
CNS0095602Golden flower (diploid) 27.422
CNS0095603Golden flower (diploid) 38.017
CNS0095604Slightly white alabastrum(tetraploid) 15.735
CNS0095605Slightly white alabastrum(tetraploid) 24.958
CNS0095606Slightly white alabastrum(tetraploid) 310.259
CNS0095607Whole white alabastrum(tetraploid) 13.599
CNS0095608Whole white alabastrum(tetraploid) 22.061
CNS0095609Whole white alabastrum(tetraploid) 36.846
CNS0095610Silvery flower (tetraploid) 17.802
CNS0095611Silvery flower (tetraploid) 26.571
CNS0095612Silvery flower (tetraploid) 34.681
CNS0095613Golden flower (tetraploid) 14.994
CNS0095614Golden flower (tetraploid) 26.795
CNS0095615Golden flower (tetraploid) 33.600
CRA001975CRR073297Stem 110.669
CRR073298Stem 28.339
CRR073299Stem 30.189
CRR073300Leaf 15.789
CRR073301Leaf 26.481
CRR073302Leaf 30.042
CRR073303Juvenile bud 10.487
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.037
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.130
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.226
CRR073316Gold flowering 23.205
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.894
CRR073319Tawny withering 22.984
CRR073320Tawny withering 32.757