Gene detail

Detail information of GWHGAAZE005763

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654342.1	3.0164E-162	PREDICTED: transcription initiation factor TFIID subunit 12, partial [Vitis vinifera]
Swissprot	tr\|Q9SR71\|TAF12_ARATH	1E-98	Transcription initiation factor TFIID subunit 12
trEMBL	tr\|D7TJ38\|D7TJ38_VITVI	2E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30264.3}
TAIR10	AT3G10070.1	1E-67	TBP-associated factor 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13420956	13425994	-
GWHAAZE00000002	mRNA	13420956	13425994	-
GWHAAZE00000002	exon	13420956	13421105	-
GWHAAZE00000002	exon	13421229	13421264	-
GWHAAZE00000002	exon	13421426	13421490	-
GWHAAZE00000002	exon	13421578	13421656	-
GWHAAZE00000002	exon	13422453	13422527	-
GWHAAZE00000002	exon	13423505	13424029	-
GWHAAZE00000002	exon	13424659	13424814	-
GWHAAZE00000002	exon	13425431	13425994	-
GWHAAZE00000002	CDS	13425431	13425994	-
GWHAAZE00000002	CDS	13424659	13424814	-
GWHAAZE00000002	CDS	13423505	13424029	-
GWHAAZE00000002	CDS	13422453	13422527	-
GWHAAZE00000002	CDS	13421578	13421656	-
GWHAAZE00000002	CDS	13421426	13421490	-
GWHAAZE00000002	CDS	13421229	13421264	-
GWHAAZE00000002	CDS	13420956	13421105	-

Transcript Sequence
>GWHTAAZE005771 ATGGAGCAACCACCACCACCATCATCATCGTCATCATCATCCTCCTCCTCCACTCCACAGCCAACTGAACAACACCAACCTCCTCTTCCTCCTCCTTCGTCTCTTCCCATAACCGTTCCCTCATCCTCACTCCCCTCTACTTCCACTCCGCTTCCCTCAAACCCTAACCCTAGACCCTCAACTTCACAACCACTCCATAACTCTCAAACGACGACGACGACGACGACGACAAGGCCACCCTTTAACCGACCTTGGCAACAACCACATTTCCCTCACTTCTCCTCTCACCTTTCTTCCATGTCCAATCCTCAATCTTCTTCTTCCCCCTCTACTCCACCTGTTCCCTCCTTTTCCTCTTCCCCTTCCCCTTCCTCCTCCTCCATTATGGCCCCACCCTCTCAGAGGCCTGCTGGAGGAATGGCCATTGGTGTTCCTGCACAATCCACCACCGCTTTCTCTTCTATCAATACCCCTCCGCCTTCTTTTGCTCAGCAATTTGGTGGGTTGGCTCGCACTTCTGCTAATCTCACCGATTCTGGTCCCAATTCAACCACTTCCCCCCAGGTGAGACCTATACAAGGAATGCAGGGACTGGGAATGACGGGATCGCTTGGTTCGCCAATGCGGCCAGTTCAGGTTCCCGTGCACCATCAACAGAGACCTGTCCAATCATCTCTTAGACCACAGGCTACCGGAAATAACCAGCCCCCTTCTACACAAAATTTCCAGGGGCATAGCCTGTTAAGAGTTCCACCTGTGGGATCTCCGGGTTCTCCATCACCTACTACGTCACAAAGTACTCAGTCTCATAATCAACCATGGCTATCTTCTGGTTCACAAGGGAAGCCTCCTCTGCCATATAGACCACAACTTAACCCACAACAATCGCAACAAAGATCCCACATCCCTCAGCAGCAACACCACCAGTCCATGCCTACAACACCACAGCAGCCGCAGCAGCAACAACAACAACAACAAACATCCTCTGCCTCGCAATCACAACCACCTTCTCTATCTCATCAGCCACAGGAGCATTATGGTCAACAATTTCAACAGTCAAGGATTCAATCATTAACACCTCAACAACAGATTACAAGAGGTGGCCAGGGATTGGCTCAGAAAGTGACGGCTCAGCCAATGGCACAGCCTAGTACGGTCCCACTAAACAAAGCAGGAAGTGGGGACATTGGCGAATCTTCTACTAGGATCTTGAGCAAGAGAAGCATTGAAGAACTAGTAAACCAGATTGATCCAATGGAGAAGTTGGACTCTGAAGTAGAAGACATTCTTATGGATATTGCAGATGAATTTGTCGAGTCTATTACAACATTTGGTTGTTCTTTGGCCAAACATAGAAAATCAAGTACATTGGAAGCTAAGGACATTCTTCTGCATCTTGAAAGAAACTGGAATATGACTCTTCCTGGGTTTGGTGGCGATGAGATTAAGAGCTACAAAAAACCTGCCGGAAGTGATATTCACAGGGAGCGCCTTGCGGTGATAAAGAAGTCAATTATTGCCTCAGAGACGGCAAATGCAAAGAGTTCTACAGGACAGGGTGGTGGAAACGCCAAAGGTCACACGTCAAAGCCACCACCTACTGCAAATATTATAGGTTCCCCAAACCCCAAGATACGTGAAGCAGTGTGA

Network for GWHGAAZE005763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03847.14	TFIID_20kDa	405	472	3.40E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03126	TAF12	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0005669	cellular_component	transcription factor TFIID complex
GO:0046982	molecular_function	protein heterodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.344
	SRR3591706	second leaf	11.402
	SRR3591707	mature leaf	10.071
	SRR3591708	Shoot apex	11.553
	SRR3591709	Stem	11.361
	SRR3591710	White floral bud	7.837
	SRR3591711	White flower	7.937
	SRR3591712	Green floral bud	8.025
	SRR3591713	Yellow flower	4.797
SRP173429	SRR8316895	Juvenile bud stage	19.409
	SRR8316896	Juvenile bud stage	23.932
	SRR8316897	Juvenile bud stage	14.445
	SRR8316894	Third green stage	8.115
	SRR8316900	Third green stage	16.777
	SRR8316901	Third green stage	17.171
	SRR8316898	Complete white stage	2.507
	SRR8316899	Complete white stage	18.020
	SRR8316903	Complete white stage	13.257
	SRR8316902	Silver flowering stage	4.398
	SRR8316904	Silver flowering stage	6.369
	SRR8316905	Silver flowering stage	3.100
	SRR8316906	Gold flowering stage	8.029
	SRR8316907	Gold flowering stage	7.333
	SRR8316908	Gold flowering stage	8.371
SRP132670	SRR6706286	Control	22.367
	SRR6706287	Light intensity 50%	20.164
	SRR6706288	Light intensity 20%	20.034
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.443
	CNS0095593	Slightly white alabastrum(diploid) 2	14.601
	CNS0095594	Slightly white alabastrum(diploid) 3	11.368
	CNS0095595	Whole white alabastrum(diploid) 2	10.753
	CNS0095596	Whole white alabastrum(diploid) 3	5.650
	CNS0095597	Whole white alabastrum(diploid) 4	8.955
	CNS0095598	Silvery flower (diploied) 1	21.106
	CNS0095599	Silvery flower (diploied) 2	24.935
	CNS0095600	Silvery flower (diploied) 3	14.236
	CNS0095601	Golden flower (diploid) 1	17.612
	CNS0095602	Golden flower (diploid) 2	17.489
	CNS0095603	Golden flower (diploid) 3	17.382
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.019
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.153
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.246
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.958
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.334
	CNS0095610	Silvery flower (tetraploid) 1	11.981
	CNS0095611	Silvery flower (tetraploid) 2	17.225
	CNS0095612	Silvery flower (tetraploid) 3	11.798
	CNS0095613	Golden flower (tetraploid) 1	5.901
	CNS0095614	Golden flower (tetraploid) 2	9.083
	CNS0095615	Golden flower (tetraploid) 3	5.041
CRA001975	CRR073297	Stem 1	33.425
	CRR073298	Stem 2	28.059
	CRR073299	Stem 3	12.456
	CRR073300	Leaf 1	27.135
	CRR073301	Leaf 2	29.110
	CRR073302	Leaf 3	7.788
	CRR073303	Juvenile bud 1	9.189
	CRR073304	Juvenile bud 2	5.844
	CRR073305	Juvenile bud 3	16.572
	CRR073306	Third green 1	1.932
	CRR073307	Third green 2	2.900
	CRR073308	Third green 3	3.017
	CRR073309	Second white 1	1.771
	CRR073310	Second white 2	2.129
	CRR073311	Second white 3	3.506
	CRR073312	Silver flowering 1	3.221
	CRR073313	Silver flowering 2	2.299
	CRR073314	Silver flowering 3	2.993
	CRR073315	Gold flowering 1	12.861
	CRR073316	Gold flowering 2	19.826
	CRR073317	Gold flowering 3	10.349
	CRR073318	Tawny withering 1	15.394
	CRR073319	Tawny withering 2	16.437
	CRR073320	Tawny withering 3	15.558