Gene detail

Detail information of GWHGAAZE005777

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077870.1	0	PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Sesamum indicum]
Swissprot	tr\|A8IZG4\|CIAO1_CHLRE	2E-106	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255\|HAMAP-Rule:MF_03037}
trEMBL	tr\|D7TJ66\|D7TJ66_VITVI	0	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000256\|HAMAP-Rule:MF_03037}
TAIR10	AT2G26060.1	4E-146	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13680251	13686687	-
GWHAAZE00000002	mRNA	13680251	13686687	-
GWHAAZE00000002	exon	13680251	13680499	-
GWHAAZE00000002	exon	13680863	13680946	-
GWHAAZE00000002	exon	13681592	13681661	-
GWHAAZE00000002	exon	13682472	13682534	-
GWHAAZE00000002	exon	13683092	13683163	-
GWHAAZE00000002	exon	13683324	13683389	-
GWHAAZE00000002	exon	13684457	13684521	-
GWHAAZE00000002	exon	13684647	13684865	-
GWHAAZE00000002	exon	13685017	13685163	-
GWHAAZE00000002	exon	13686487	13686687	-
GWHAAZE00000002	CDS	13686487	13686687	-
GWHAAZE00000002	CDS	13685017	13685163	-
GWHAAZE00000002	CDS	13684647	13684865	-
GWHAAZE00000002	CDS	13684457	13684521	-
GWHAAZE00000002	CDS	13683324	13683389	-
GWHAAZE00000002	CDS	13683092	13683163	-
GWHAAZE00000002	CDS	13682472	13682534	-
GWHAAZE00000002	CDS	13681592	13681661	-
GWHAAZE00000002	CDS	13680863	13680946	-
GWHAAZE00000002	CDS	13680428	13680499	-
GWHAAZE00000002	three_prime_UTR	13680251	13680427	-

Transcript Sequence
>GWHTAAZE005785 ATGAGTTTATTGGAAGAGAACGTGGATCTAACGGAGATTCAGAGCCTGGAAGGCCACACAGATAGGGTTTGGGGTCTGGCTTGGAACCAGGTCACCGGCGTTTCCGGTATACCGTCGATGCTCGCCTCTTGTAGTGGCGATAAGACAGTCCGAATCTGGCAACAACAGACTTCCTCCTCTACTGCCTCTTTCGTTTGCAAGGCAATTTTAGACGAGACTCACACTCGAACAGTTAGATCATGTGCATGGTCGCCATCTGGTAAATTGTTGGCAACTGCAAGTTTTGATGCCACCACTGCTATTTGGGAACAGATTGGGGAAGATTTTGAATGCGTGTCTACATTAGAGGGTCATGAAAATGAAGTTAAAAGTGTCTCTTGGAACGCGTCTGGTTCACTACTTGCAACTTGTGGCAGAGATAAATCAGTTTGGATATGGGAAGTTTTGCCCGGGAATGAATTTGAGTGTGTTTCTGTGTTGCAAGGACATACACAAGATGTTAAGATGGTCCAGTGGCATCCATCAATGGATGTTTTGTTCTCATGTAGCTATGATAACACTGTTAAGGTTTGGGCAGAGGATGGTGACAGTGATGATTGGCATTGTGTTCAAACTTTAGGTGAATCTAACAATGGACACTCATCTACAGTCTGGGCTCTGTCTTTTAATTCGAGTGGAGACAAAATGGTTACCTCTAGCGATGATCTTACCTTAAAGGTATGGGGTGCAGACATTGTAAGAATGCAGTCTGGTGATGGCTATGCTCCTTGGAAACATCTCTGCACTCTCTCGGGTTATCATGATCGAACAATTTTTTCAGTCCATTGGTCAAGGGATGGGATAATTGCTAGTGGAGCAGCTGATGATGCTGTGCGTTTATTTGTAGAGAGCAAGGACGGCATGGTTGACGGACCTATGTATAAATTACTTACAAAGAAGGAAAAGGCCCACGGCATGGACATAAATTCAGTGCAATGGAGCTCTGGGCAGGAAGACAGGCTTCTTGCTTCTTCAAGTGATGATGGGACAGTCAAGATATGGAAATTGGCCTCCCTGTGAGATAAGATACATAGATTATCGAATAATTAATCGTATTTAGTTTTTGTGTTATTATTAGTTTAATCAGCAAAGAATTCTCGTGTATTTTTCTGAATTTGTTGTAAAAAATCTTCTTTTTTTTATCACCCATATTGTAGTTTGCCAGTCCTTGAAATTTTATGAGGTGAAATGCAAGAG

Network for GWHGAAZE005777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	13	53	4.50E-05
PF00400.33	WD40	73	102	0.0031
PF00400.33	WD40	110	146	4.50E-08
PF00400.33	WD40	155	191	6.60E-06
PF00400.33	WD40	201	241	0.00014
PF00400.33	WD40	315	348	0.0003

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016226	biological_process	iron-sulfur cluster assembly
GO:0097361	cellular_component	CIA complex
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.926
	SRR3591706	second leaf	42.262
	SRR3591707	mature leaf	38.608
	SRR3591708	Shoot apex	58.121
	SRR3591709	Stem	51.186
	SRR3591710	White floral bud	59.010
	SRR3591711	White flower	59.657
	SRR3591712	Green floral bud	53.976
	SRR3591713	Yellow flower	67.239
SRP173429	SRR8316895	Juvenile bud stage	23.705
	SRR8316896	Juvenile bud stage	33.286
	SRR8316897	Juvenile bud stage	17.280
	SRR8316894	Third green stage	15.114
	SRR8316900	Third green stage	53.319
	SRR8316901	Third green stage	42.888
	SRR8316898	Complete white stage	28.879
	SRR8316899	Complete white stage	79.961
	SRR8316903	Complete white stage	38.294
	SRR8316902	Silver flowering stage	21.111
	SRR8316904	Silver flowering stage	29.155
	SRR8316905	Silver flowering stage	18.169
	SRR8316906	Gold flowering stage	53.935
	SRR8316907	Gold flowering stage	54.830
	SRR8316908	Gold flowering stage	67.882
SRP132670	SRR6706286	Control	42.809
	SRR6706287	Light intensity 50%	46.353
	SRR6706288	Light intensity 20%	52.545
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.091
	CNS0095593	Slightly white alabastrum(diploid) 2	39.278
	CNS0095594	Slightly white alabastrum(diploid) 3	32.650
	CNS0095595	Whole white alabastrum(diploid) 2	33.379
	CNS0095596	Whole white alabastrum(diploid) 3	30.461
	CNS0095597	Whole white alabastrum(diploid) 4	34.099
	CNS0095598	Silvery flower (diploied) 1	39.597
	CNS0095599	Silvery flower (diploied) 2	40.751
	CNS0095600	Silvery flower (diploied) 3	54.586
	CNS0095601	Golden flower (diploid) 1	41.425
	CNS0095602	Golden flower (diploid) 2	52.956
	CNS0095603	Golden flower (diploid) 3	49.874
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.160
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.008
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.344
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.639
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.731
	CNS0095610	Silvery flower (tetraploid) 1	53.889
	CNS0095611	Silvery flower (tetraploid) 2	52.056
	CNS0095612	Silvery flower (tetraploid) 3	36.950
	CNS0095613	Golden flower (tetraploid) 1	43.125
	CNS0095614	Golden flower (tetraploid) 2	53.704
	CNS0095615	Golden flower (tetraploid) 3	50.105
CRA001975	CRR073297	Stem 1	38.103
	CRR073298	Stem 2	33.645
	CRR073299	Stem 3	37.693
	CRR073300	Leaf 1	39.711
	CRR073301	Leaf 2	41.130
	CRR073302	Leaf 3	45.052
	CRR073303	Juvenile bud 1	55.527
	CRR073304	Juvenile bud 2	43.339
	CRR073305	Juvenile bud 3	51.147
	CRR073306	Third green 1	22.472
	CRR073307	Third green 2	19.890
	CRR073308	Third green 3	20.023
	CRR073309	Second white 1	28.446
	CRR073310	Second white 2	27.511
	CRR073311	Second white 3	22.749
	CRR073312	Silver flowering 1	21.760
	CRR073313	Silver flowering 2	18.926
	CRR073314	Silver flowering 3	18.314
	CRR073315	Gold flowering 1	28.533
	CRR073316	Gold flowering 2	42.443
	CRR073317	Gold flowering 3	26.818
	CRR073318	Tawny withering 1	40.412
	CRR073319	Tawny withering 2	38.060
	CRR073320	Tawny withering 3	39.451