Gene detail

Detail information of GWHGAAZE005800

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	Q39693.1INV3_DAUCA	0	RecName: Full=Beta-fructofuranosidase, insoluble isoenzyme 3; AltName: Full=Cell wall beta-fructosidase 3; AltName: Full=Invertase 3; AltName: Full=Sucrose hydrolase 3; Flags: Precursor [Daucus carota]
Swissprot	tr\|P26792\|INV1_DAUCA	0	Beta-fructofuranosidase, insoluble isoenzyme 1 (Precursor)
trEMBL	tr\|J9UP76\|J9UP76_MANES	0	Cell wall invertase {ECO:0000313\|EMBL:AFR69122.1}
TAIR10	AT3G52600.1	1E-171	cell wall invertase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14054239	14056252	+
GWHAAZE00000002	mRNA	14054239	14056252	+
GWHAAZE00000002	exon	14054239	14054755	+
GWHAAZE00000002	exon	14054839	14055092	+
GWHAAZE00000002	exon	14055201	14055359	+
GWHAAZE00000002	exon	14055517	14055764	+
GWHAAZE00000002	exon	14055853	14055943	+
GWHAAZE00000002	exon	14056070	14056252	+
GWHAAZE00000002	CDS	14054239	14054755	+
GWHAAZE00000002	CDS	14054839	14055092	+
GWHAAZE00000002	CDS	14055201	14055359	+
GWHAAZE00000002	CDS	14055517	14055764	+
GWHAAZE00000002	CDS	14055853	14055943	+
GWHAAZE00000002	CDS	14056070	14056252	+

Transcript Sequence
>GWHTAAZE005808 ATGATTTATAAGGGAATCTACCATCTATTTTACCAATACAATCCCAAGGGTGCTGTGTGGGGCAATATTGTGTGGGCCCACTCTGTATCAACGGATCTGATCAATTGGAAACCCTTGGAGCCAGCAATATTCCCTTCCGAGCCCTTCGACAAAGATGGGTGTTGGTCCGGGTCCGCTACTATCTTACCCGAGGATAAACCCATCATACTCTACACGGGAATAGTTGCATTGACCCCAAAACCTGGATCCCAGGTCCAAAACTATGCAGTACCTGCGAACTATTCGGATCCATATCTCACCAAATGGATCAAGCCCGATGACAACCCGGTATTGAAGCCCACGGGTGAGAACATCTCTGCATGGAGGGACCCGACAACCGGGTGGAACGTTAACGGAGAATGGAACATACTTGTAGGTGGGAGAGAAAATAACAAAGGGATTGCGTATTTGTACAAAAGCAAGGACTTCATCAAATGGACTAAGGCCCCACACACTTTACATGAAGTTGATAATACAGCACGTTTGAAGGTGAGCCTTGATGCTACTAGGTTTGAGTACTACACTGTTGGAAAGTATGTTCCCGAAAAGGATAAGTATATACCGGATCCAACATCCGTTGATGGGTGGGCGGGGTTAAGATACGATTATGGTAATTTTTATGCGTCCAAGACGTTTTATGATTCTAACAAGAACAGAAGGATTTTGTGGGGCTGGGCTAATGAATCCGATACTCCTGAGGAAGATACTGCTAAGGGTTGGGCTGGAATTCAGGCAATTCCAAGAAAGATTTGGCTTGATACTAGTGGGAAACAATTAATACAATGGCCTATCGAGGAATTGGAAACGCTAAGGGGGGAAATGACGGAGTTGAAAGAAGTAAAACTAGAGAAGGGTTTGCGTACTAAAGTTACTGAAATAACAGCTGCGCAGGCCGATGTTGAAGCAACCTTCTCATTTGCAAGCTTGGATAAAGCTGAACCGTGGGACGCTAGCTGGGATAAGATTGATGCGGAATCTGTGTGCAAGCAAAAGGGTTCAACTGTTGAAGGCGGAGTTGGACCCTTTGGGTTCTTGACACTTGCTTCTGAAAACCTAGAAGAATATACTCCTGTCTTTTTTAGAGTTTTTAAGCTTAGCGAGAATACTCATAAAGTTCTCATGTGCTCTGATGCAACCAGTTCCTCCTTAGGCAAAGGATTGTACAAACCATCATTTGCAGGCTATGTCGATGTAGATTTAGCTGATAAGAAGCTTTCTCTTAGGAGTTTGATTGATCACTCAGTTGTAGAAAGTTTTGGGGCAGGAGGGAAAACGTGTATATTATCTAGGGTTTATCCAACTTTAGCGGTCACGGATAAAGCTCATCTATTTTTGTTCAACAATGGGACGGAGCTGATTACTGCTGACACAGTTAATGCGTGGAGCATGAAGGTTCCTAATGAGATGAACTAA

Network for GWHGAAZE005800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00251.21	Glyco_hydro_32N	1	276	1.70E-76
PF08244.13	Glyco_hydro_32C	279	474	7.30E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.491
	SRR3591706	second leaf	0.342
	SRR3591707	mature leaf	0.838
	SRR3591708	Shoot apex	0.423
	SRR3591709	Stem	3.461
	SRR3591710	White floral bud	424.794
	SRR3591711	White flower	25.169
	SRR3591712	Green floral bud	603.006
	SRR3591713	Yellow flower	13.584
SRP173429	SRR8316895	Juvenile bud stage	102.397
	SRR8316896	Juvenile bud stage	336.152
	SRR8316897	Juvenile bud stage	133.655
	SRR8316894	Third green stage	111.137
	SRR8316900	Third green stage	431.454
	SRR8316901	Third green stage	453.783
	SRR8316898	Complete white stage	0.537
	SRR8316899	Complete white stage	3.231
	SRR8316903	Complete white stage	0.742
	SRR8316902	Silver flowering stage	5.693
	SRR8316904	Silver flowering stage	12.656
	SRR8316905	Silver flowering stage	3.436
	SRR8316906	Gold flowering stage	2.389
	SRR8316907	Gold flowering stage	1.022
	SRR8316908	Gold flowering stage	0.925
SRP132670	SRR6706286	Control	253.994
	SRR6706287	Light intensity 50%	238.208
	SRR6706288	Light intensity 20%	211.412
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	481.913
	CNS0095593	Slightly white alabastrum(diploid) 2	345.555
	CNS0095594	Slightly white alabastrum(diploid) 3	567.667
	CNS0095595	Whole white alabastrum(diploid) 2	676.002
	CNS0095596	Whole white alabastrum(diploid) 3	895.977
	CNS0095597	Whole white alabastrum(diploid) 4	657.447
	CNS0095598	Silvery flower (diploied) 1	26.818
	CNS0095599	Silvery flower (diploied) 2	93.352
	CNS0095600	Silvery flower (diploied) 3	22.410
	CNS0095601	Golden flower (diploid) 1	28.581
	CNS0095602	Golden flower (diploid) 2	17.823
	CNS0095603	Golden flower (diploid) 3	19.552
	CNS0095604	Slightly white alabastrum(tetraploid) 1	993.820
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1045.953
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.641
	CNS0095607	Whole white alabastrum(tetraploid) 1	1495.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	1664.308
	CNS0095609	Whole white alabastrum(tetraploid) 3	890.579
	CNS0095610	Silvery flower (tetraploid) 1	14.429
	CNS0095611	Silvery flower (tetraploid) 2	63.481
	CNS0095612	Silvery flower (tetraploid) 3	155.071
	CNS0095613	Golden flower (tetraploid) 1	26.860
	CNS0095614	Golden flower (tetraploid) 2	4.832
	CNS0095615	Golden flower (tetraploid) 3	81.017
CRA001975	CRR073297	Stem 1	102.613
	CRR073298	Stem 2	120.936
	CRR073299	Stem 3	56.619
	CRR073300	Leaf 1	218.750
	CRR073301	Leaf 2	211.970
	CRR073302	Leaf 3	128.007
	CRR073303	Juvenile bud 1	190.033
	CRR073304	Juvenile bud 2	168.750
	CRR073305	Juvenile bud 3	22.454
	CRR073306	Third green 1	128.882
	CRR073307	Third green 2	169.175
	CRR073308	Third green 3	122.128
	CRR073309	Second white 1	6.866
	CRR073310	Second white 2	21.327
	CRR073311	Second white 3	27.463
	CRR073312	Silver flowering 1	132.016
	CRR073313	Silver flowering 2	129.435
	CRR073314	Silver flowering 3	74.077
	CRR073315	Gold flowering 1	124.172
	CRR073316	Gold flowering 2	24.618
	CRR073317	Gold flowering 3	50.862
	CRR073318	Tawny withering 1	111.397
	CRR073319	Tawny withering 2	107.084
	CRR073320	Tawny withering 3	84.330