Gene detail

Detail information of GWHGAAZE005811

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245803.1	1.15812E-63	PREDICTED: NAC domain-containing protein 90-like [Nelumbo nucifera]
Swissprot	tr\|Q9FMR3\|NAC90_ARATH	9E-52	NAC domain-containing protein 90
trEMBL	tr\|B9GI04\|B9GI04_POPTR	3E-63	NAC domain-containing protein 90 {ECO:0000313\|EMBL:EEE83082.2}
TAIR10	AT5G22380.1	2E-42	NAC domain containing protein 90

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14290128	14292016	+
GWHAAZE00000002	mRNA	14290128	14292016	+
GWHAAZE00000002	exon	14290128	14290284	+
GWHAAZE00000002	exon	14290665	14290751	+
GWHAAZE00000002	exon	14290864	14290929	+
GWHAAZE00000002	exon	14291688	14292016	+
GWHAAZE00000002	CDS	14290128	14290284	+
GWHAAZE00000002	CDS	14290665	14290751	+
GWHAAZE00000002	CDS	14290864	14290929	+
GWHAAZE00000002	CDS	14291688	14292016	+

Transcript Sequence
>GWHTAAZE005819 ATGGATGAAATGCCACCAGGGTATAGATTTTATCCAACAGAGGAAGAGCTTATTTCCTTCTATTTGAACAAGAAGCTTCAAGGCCCTCCCACACCCCAACTCGATCGCGTTATTCCCCTTCTCAACATTTACAATTTCAATCCCTGGGACCTCCCTCATCAGGAAGAGGAACAGAAGATTACCTCCGTTCATCATGATGTCGAGAGCTTGTTGAGGTTGTTGCTGACTGCCGTTGATCTAATCCGTAAAGAGAGGATCGAATTTCCAATTAGGATTTCTTTAGGGTTTCAATCTAAACCGTTCCATCAAGAATATGCCGGGGAGCTTTGTCATGGTGACCCAGAACAATGGTTTTTCTTTATACCACGACAGGAGAAAGAAGCACGCGGTGGAAGGCCAAACAGGCTGACTACTACTGGATATTGGAAGGCCACTGGTTCACCCGGTTACGTCTACTCTAAAGATAGCAAAATCATAGGCTTGAAGAGAACAATGGTTTTCTACAAAGGTAGAGCTCCTGCCGGAAGAAAGACTCAATGGAAGATGAATGAGTATAGAGCCATTCATTATCCACACCAAGCTACTGCTGCTTCTTCTTCTTCATCTTCTGCTACTCCAAAGGTCTGTCACTTTCACTAA

Network for GWHGAAZE005811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	5	186	3.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.188
	SRR3591710	White floral bud	1.096
	SRR3591711	White flower	0.750
	SRR3591712	Green floral bud	0.996
	SRR3591713	Yellow flower	0.179
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.054
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.387
SRP132670	SRR6706286	Control	0.189
	SRR6706287	Light intensity 50%	0.117
	SRR6706288	Light intensity 20%	0.019
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.207
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.220
	CNS0095596	Whole white alabastrum(diploid) 3	0.261
	CNS0095597	Whole white alabastrum(diploid) 4	0.211
	CNS0095598	Silvery flower (diploied) 1	0.596
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	1.221
	CNS0095602	Golden flower (diploid) 2	0.348
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.236
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.368
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.383
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.223
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.130
	CRR073315	Gold flowering 1	0.562
	CRR073316	Gold flowering 2	0.971
	CRR073317	Gold flowering 3	0.096
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.400
	CRR073320	Tawny withering 3	0.091