Gene detail

Detail information of GWHGAAZE005822

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027867.1	6.4082E-158	Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q1PF50\|EDA2_ARATH	0.00000009	Probable serine protease EDA2 (Precursor)
trEMBL	tr\|A0A061F1G9\|A0A061F1G9_THECC	2E-158	Alpha/beta-Hydrolases superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY08369.1}
TAIR10	AT2G24280.1	7E-67	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14493628	14498300	-
GWHAAZE00000002	mRNA	14493628	14498300	-
GWHAAZE00000002	exon	14493628	14493738	-
GWHAAZE00000002	exon	14495150	14495305	-
GWHAAZE00000002	exon	14495553	14495676	-
GWHAAZE00000002	exon	14496069	14496181	-
GWHAAZE00000002	exon	14497419	14497580	-
GWHAAZE00000002	exon	14497920	14498300	-
GWHAAZE00000002	CDS	14497920	14498300	-
GWHAAZE00000002	CDS	14497419	14497580	-
GWHAAZE00000002	CDS	14496069	14496181	-
GWHAAZE00000002	CDS	14495553	14495676	-
GWHAAZE00000002	CDS	14495150	14495305	-
GWHAAZE00000002	CDS	14493628	14493738	-

Transcript Sequence
>GWHTAAZE005830 ATGGCAACTAGATTATATCATTGTCTCTTATACTTCCTTTTCCTTCTCTCTTCATCTACTCTATCTTTATCCCTAAAAATTTCCCCCAGGTTCCCTTCTTCAATCATTACGCCAGAGCATCTCTCCGTTTCTACCAAAAACACACTTTACAAAACAAAATACTTCACCCAAATTCTTGATCACTTCAATTACAACCCAGAGAGTTATCAAACATTCCAACACAGATATTTGATCAATGATACATATTGGGGCGGCCCCAAAAACAATTCTCCAATCTTCGTTTACACTGGAAACGAAGGAGACATCGAATGGTTCACTCAAAACACCGGATTTATGTTCGAGAATGCCCCCCATTTCAAAGCTCTCTTAGTTTTCATTGAGCATAGGTTTTATGGGAAATCAATACCATATGGTGGGGACGAAGAGGTTGCATATAAGAATGCAAGTACACTTGGATATTTGAGCTCAACGCAGGCATTGGCTGATTTTGCTACATTGATTATTGATTTGAAGAAGAATTTGACTGCTACTGACTCTCCTGTGAGTGAGAGTGAGAACTGCTACAAGGTGATTAAAGGGTCATGGCAACAAATTTCTGACACTGCAAATCAGCCTGGGGGACTAGAGTCATTGCGAAGATCTTTTAACATATGCAAAAACGATATTGATGCAAATTCTCTAGAGGGTTGGCTAGGGCAAGCATTTATTTACACGGCAATGACGGATTATCCAACTCCTTCCAATTTTCTTAGTCCTCTGCCAGCTTATCCGGTCAAACAGATGTGCAAGGCAATTGACGATCCAACGCTTGGTAATGACACGTTTGCAAAGCTCTATGGTGCAGCTAACATCTACTATAACTACACTGGAAATGCCACGTGTTTTGATCTTGACGATCACTCAGATCCCCACGGTCTTAGTGAATGGACATGGCAGGCCCGTCAGGTGCCTGAGCATCTCGTCCGGCGTCAAACCACGACAACTTACACCTCAGCCCCTGGCCGGAGTTCATCTCCACGATCGTCTGGATTCCTCAAAACTCCATGA

Network for GWHGAAZE005822

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05577.13	Peptidase_S28	57	178	1.30E-26
PF05577.13	Peptidase_S28	183	279	1.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01285	PRCP	Renin-angiotensin system	map04614
K01285	PRCP	Protein digestion and absorption	map04974

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.060
	SRR3591706	second leaf	6.289
	SRR3591707	mature leaf	11.920
	SRR3591708	Shoot apex	1.741
	SRR3591709	Stem	9.739
	SRR3591710	White floral bud	21.338
	SRR3591711	White flower	10.474
	SRR3591712	Green floral bud	14.113
	SRR3591713	Yellow flower	3.262
SRP173429	SRR8316895	Juvenile bud stage	3.090
	SRR8316896	Juvenile bud stage	4.164
	SRR8316897	Juvenile bud stage	0.589
	SRR8316894	Third green stage	3.902
	SRR8316900	Third green stage	13.482
	SRR8316901	Third green stage	6.361
	SRR8316898	Complete white stage	7.468
	SRR8316899	Complete white stage	23.155
	SRR8316903	Complete white stage	10.452
	SRR8316902	Silver flowering stage	1.007
	SRR8316904	Silver flowering stage	3.241
	SRR8316905	Silver flowering stage	0.841
	SRR8316906	Gold flowering stage	0.888
	SRR8316907	Gold flowering stage	1.497
	SRR8316908	Gold flowering stage	0.938
SRP132670	SRR6706286	Control	11.640
	SRR6706287	Light intensity 50%	8.247
	SRR6706288	Light intensity 20%	8.614
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.043
	CNS0095593	Slightly white alabastrum(diploid) 2	3.817
	CNS0095594	Slightly white alabastrum(diploid) 3	3.727
	CNS0095595	Whole white alabastrum(diploid) 2	5.091
	CNS0095596	Whole white alabastrum(diploid) 3	5.459
	CNS0095597	Whole white alabastrum(diploid) 4	8.487
	CNS0095598	Silvery flower (diploied) 1	21.107
	CNS0095599	Silvery flower (diploied) 2	13.987
	CNS0095600	Silvery flower (diploied) 3	19.638
	CNS0095601	Golden flower (diploid) 1	13.009
	CNS0095602	Golden flower (diploid) 2	15.892
	CNS0095603	Golden flower (diploid) 3	14.807
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.343
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.763
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.257
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.228
	CNS0095610	Silvery flower (tetraploid) 1	14.629
	CNS0095611	Silvery flower (tetraploid) 2	25.405
	CNS0095612	Silvery flower (tetraploid) 3	9.911
	CNS0095613	Golden flower (tetraploid) 1	1.130
	CNS0095614	Golden flower (tetraploid) 2	11.177
	CNS0095615	Golden flower (tetraploid) 3	2.342
CRA001975	CRR073297	Stem 1	4.229
	CRR073298	Stem 2	5.581
	CRR073299	Stem 3	3.500
	CRR073300	Leaf 1	12.070
	CRR073301	Leaf 2	12.300
	CRR073302	Leaf 3	7.345
	CRR073303	Juvenile bud 1	11.025
	CRR073304	Juvenile bud 2	12.476
	CRR073305	Juvenile bud 3	18.519
	CRR073306	Third green 1	3.084
	CRR073307	Third green 2	5.980
	CRR073308	Third green 3	3.370
	CRR073309	Second white 1	0.445
	CRR073310	Second white 2	0.639
	CRR073311	Second white 3	0.066
	CRR073312	Silver flowering 1	0.175
	CRR073313	Silver flowering 2	0.139
	CRR073314	Silver flowering 3	0.063
	CRR073315	Gold flowering 1	11.565
	CRR073316	Gold flowering 2	20.397
	CRR073317	Gold flowering 3	12.137
	CRR073318	Tawny withering 1	11.897
	CRR073319	Tawny withering 2	11.494
	CRR073320	Tawny withering 3	5.110