Detail information of GWHGAAZE005836


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007039274.11.06312E-48RING-H2 finger protein ATL79, putative [Theobroma cacao]
Swissprottr|Q9FGJ6|ATL79_ARATH1E-41RING-H2 finger protein ATL79 (Precursor)
trEMBLtr|A0A061G1R4|A0A061G1R4_THECC4E-49RING-H2 finger protein ATL79, putative {ECO:0000313|EMBL:EOY23775.1}
TAIR10AT5G47610.13E-29RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1478027714780930+
GWHAAZE00000002mRNA1478027714780930+
GWHAAZE00000002exon1478027714780930+
GWHAAZE00000002CDS1478027714780930+
Transcript Sequence

Network for GWHGAAZE005836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21331763.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.643
SRR3591706second leaf5.336
SRR3591707mature leaf8.255
SRR3591708Shoot apex8.015
SRR3591709Stem1.928
SRR3591710White floral bud1.928
SRR3591711White flower1.377
SRR3591712Green floral bud5.593
SRR3591713Yellow flower0.344
SRP173429 SRR8316895Juvenile bud stage 7.321
SRR8316896Juvenile bud stage 22.095
SRR8316897Juvenile bud stage 2.038
SRR8316894Third green stage 5.491
SRR8316900Third green stage 14.540
SRR8316901Third green stage 12.836
SRR8316898Complete white stage 1.961
SRR8316899Complete white stage 7.897
SRR8316903Complete white stage 1.819
SRR8316902Silver flowering stage0.408
SRR8316904Silver flowering stage0.730
SRR8316905Silver flowering stage0.305
SRR8316906Gold flowering stage 0.687
SRR8316907Gold flowering stage 0.415
SRR8316908Gold flowering stage 0.105
SRP132670SRR6706286Control22.850
SRR6706287Light intensity 50%19.852
SRR6706288Light intensity 20%20.510
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.288
CNS0095593Slightly white alabastrum(diploid) 27.375
CNS0095594Slightly white alabastrum(diploid) 37.717
CNS0095595Whole white alabastrum(diploid) 28.454
CNS0095596Whole white alabastrum(diploid) 38.549
CNS0095597Whole white alabastrum(diploid) 48.161
CNS0095598Silvery flower (diploied) 110.162
CNS0095599Silvery flower (diploied) 29.064
CNS0095600Silvery flower (diploied) 35.177
CNS0095601Golden flower (diploid) 115.412
CNS0095602Golden flower (diploid) 29.458
CNS0095603Golden flower (diploid) 38.937
CNS0095604Slightly white alabastrum(tetraploid) 17.857
CNS0095605Slightly white alabastrum(tetraploid) 28.684
CNS0095606Slightly white alabastrum(tetraploid) 38.615
CNS0095607Whole white alabastrum(tetraploid) 17.612
CNS0095608Whole white alabastrum(tetraploid) 24.530
CNS0095609Whole white alabastrum(tetraploid) 36.688
CNS0095610Silvery flower (tetraploid) 10.731
CNS0095611Silvery flower (tetraploid) 24.579
CNS0095612Silvery flower (tetraploid) 30.898
CNS0095613Golden flower (tetraploid) 10.976
CNS0095614Golden flower (tetraploid) 21.378
CNS0095615Golden flower (tetraploid) 30.425
CRA001975CRR073297Stem 115.432
CRR073298Stem 217.578
CRR073299Stem 335.779
CRR073300Leaf 110.833
CRR073301Leaf 210.763
CRR073302Leaf 316.430
CRR073303Juvenile bud 112.169
CRR073304Juvenile bud 24.852
CRR073305Juvenile bud 311.868
CRR073306Third green 10.453
CRR073307Third green 21.070
CRR073308Third green 30.735
CRR073309Second white 10.121
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 15.237
CRR073316Gold flowering 23.833
CRR073317Gold flowering 34.441
CRR073318Tawny withering 111.323
CRR073319Tawny withering 20.893
CRR073320Tawny withering 313.154