Gene detail

Detail information of GWHGAAZE005839

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009778632.1	8.064E-158	PREDICTED: probable cinnamyl alcohol dehydrogenase 1 [Nicotiana sylvestris]
Swissprot	tr\|Q9CAI3\|CADH1_ARATH	2E-143	Probable cinnamyl alcohol dehydrogenase 1
trEMBL	tr\|A0A068UKW9\|A0A068UKW9_COFCA	9E-156	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08884.1}
TAIR10	AT1G72680.1	1E-108	cinnamyl-alcohol dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14840108	14842656	+
GWHAAZE00000002	mRNA	14840108	14842656	+
GWHAAZE00000002	exon	14840108	14840195	+
GWHAAZE00000002	exon	14840498	14840519	+
GWHAAZE00000002	exon	14840663	14840776	+
GWHAAZE00000002	exon	14840921	14841103	+
GWHAAZE00000002	exon	14841473	14841824	+
GWHAAZE00000002	exon	14842313	14842463	+
GWHAAZE00000002	exon	14842562	14842656	+
GWHAAZE00000002	CDS	14840108	14840195	+
GWHAAZE00000002	CDS	14840498	14840519	+
GWHAAZE00000002	CDS	14840663	14840776	+
GWHAAZE00000002	CDS	14840921	14841103	+
GWHAAZE00000002	CDS	14841473	14841824	+
GWHAAZE00000002	CDS	14842313	14842463	+
GWHAAZE00000002	CDS	14842562	14842656	+

Transcript Sequence
>GWHTAAZE005847 ATGAGTTCACAAGCTGTGAAGGAGGAGTGTCTCGGATGGGCAGCTCGAGATCCATCTGGAGTACTATCACCTTACAAATTCAGTCGAGAAGAGTTTTACCAACATGTGCAGGATGTGAGGAGCGATGATGTATTCTTGAGTATTACACACTGCGGTGTTTGTTACGCCGATGTTGCCTGGACTAGGAATAAATTCGGACACTCGAAGTATCCGTTAGTGCCTGGCTTCAAAGTTGGTGACATTGTTGGAGTTGGAACTTATGTCAACTCTTGCAGAGAGTGCGAGTATTGTAATGATGGTTTAGAAGTTCATTGCTCAAAGGGATCGGTCTTCACTTTTGATAGTATTGACGATGATGGTACCGTCACTAAAGGGGGATATTCTAGTTACATTGTTGTTCATGAAAGGTACTGCTATAGAATACCCAAGAATTACCCACCTGCTTTAGCAGCACCTTTGCTTTGTGCGGGAATTACAGTTTACTCCCCCATGATGCGCCATAAAATGAACGAGCCAGGTAAGTCTCTAGGGGTGATTGGGCTAGGTGGTCTTGGTCACTTGGCAGTGAAGTTTGGCAAGGCTTTCGGATTGAATGTAACTGTGTTTAGCACAAGTATATCCAAGAGGGAGGAAGCCCTTAATCTGCTTGGAGCTGACAAATTTGTGGTCTCCTCTGATGAACAGCAAATGACGGTGAGATTCCCTCAGCTTGGGATAGACAAATTTAGTGGTGATAGAACACATAAAATGCTAATTAGGGCCCTGGCTAAATCCTTAGACTTCATAATAAACACAGCGTCAGGGGATATCCCATTTGATCCATACATGTCACTGTTGAAGACGGCTGGTGTGTTAGTCTTGGTGGGGTTCCCAAGCGAAGTGAAACTCAGTCCAGCAAGCCTTATTATGGGTATGAAAACAATTTCCGGGAGTATAACTGGTGGTACAAAGAGACACAGGAAATGCTGGACTTTTGTGCTGCCCATAAAATTTACCCCAACATAG

Network for GWHGAAZE005839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	42	140	6.80E-10
PF00107.27	ADH_zinc_N	183	318	6.30E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00083	CAD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.745
	SRR3591706	second leaf	2.848
	SRR3591707	mature leaf	5.867
	SRR3591708	Shoot apex	3.237
	SRR3591709	Stem	7.257
	SRR3591710	White floral bud	8.081
	SRR3591711	White flower	15.193
	SRR3591712	Green floral bud	5.110
	SRR3591713	Yellow flower	24.566
SRP173429	SRR8316895	Juvenile bud stage	7.039
	SRR8316896	Juvenile bud stage	16.385
	SRR8316897	Juvenile bud stage	1.120
	SRR8316894	Third green stage	2.409
	SRR8316900	Third green stage	13.095
	SRR8316901	Third green stage	17.889
	SRR8316898	Complete white stage	7.636
	SRR8316899	Complete white stage	23.784
	SRR8316903	Complete white stage	9.004
	SRR8316902	Silver flowering stage	17.685
	SRR8316904	Silver flowering stage	20.073
	SRR8316905	Silver flowering stage	9.254
	SRR8316906	Gold flowering stage	33.677
	SRR8316907	Gold flowering stage	31.299
	SRR8316908	Gold flowering stage	17.843
SRP132670	SRR6706286	Control	26.109
	SRR6706287	Light intensity 50%	27.832
	SRR6706288	Light intensity 20%	24.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.541
	CNS0095593	Slightly white alabastrum(diploid) 2	10.724
	CNS0095594	Slightly white alabastrum(diploid) 3	14.896
	CNS0095595	Whole white alabastrum(diploid) 2	12.375
	CNS0095596	Whole white alabastrum(diploid) 3	6.346
	CNS0095597	Whole white alabastrum(diploid) 4	9.173
	CNS0095598	Silvery flower (diploied) 1	24.610
	CNS0095599	Silvery flower (diploied) 2	17.483
	CNS0095600	Silvery flower (diploied) 3	29.097
	CNS0095601	Golden flower (diploid) 1	22.056
	CNS0095602	Golden flower (diploid) 2	37.738
	CNS0095603	Golden flower (diploid) 3	42.041
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.057
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.724
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.224
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.565
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.911
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.062
	CNS0095610	Silvery flower (tetraploid) 1	22.766
	CNS0095611	Silvery flower (tetraploid) 2	17.013
	CNS0095612	Silvery flower (tetraploid) 3	17.758
	CNS0095613	Golden flower (tetraploid) 1	19.969
	CNS0095614	Golden flower (tetraploid) 2	26.342
	CNS0095615	Golden flower (tetraploid) 3	26.386
CRA001975	CRR073297	Stem 1	13.020
	CRR073298	Stem 2	11.932
	CRR073299	Stem 3	12.607
	CRR073300	Leaf 1	18.158
	CRR073301	Leaf 2	18.015
	CRR073302	Leaf 3	9.539
	CRR073303	Juvenile bud 1	19.057
	CRR073304	Juvenile bud 2	17.754
	CRR073305	Juvenile bud 3	22.669
	CRR073306	Third green 1	25.092
	CRR073307	Third green 2	18.279
	CRR073308	Third green 3	17.343
	CRR073309	Second white 1	28.676
	CRR073310	Second white 2	20.950
	CRR073311	Second white 3	16.183
	CRR073312	Silver flowering 1	21.353
	CRR073313	Silver flowering 2	30.505
	CRR073314	Silver flowering 3	30.387
	CRR073315	Gold flowering 1	16.039
	CRR073316	Gold flowering 2	21.842
	CRR073317	Gold flowering 3	22.556
	CRR073318	Tawny withering 1	25.373
	CRR073319	Tawny withering 2	17.368
	CRR073320	Tawny withering 3	18.856