Gene detail

Detail information of GWHGAAZE005849

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010660457.1	0	PREDICTED: nuclear pore complex protein NUP98A [Vitis vinifera]
Swissprot	tr\|Q8RY25\|NU98A_ARATH	0	Nuclear pore complex protein NUP98A {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|F6HUA4\|F6HUA4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58327.1}
TAIR10	AT1G10390.2	4E-167	Nucleoporin autopeptidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	14911616	14920439	-
GWHAAZE00000002	mRNA	14911616	14920439	-
GWHAAZE00000002	exon	14920397	14920439	-
GWHAAZE00000002	exon	14920240	14920300	-
GWHAAZE00000002	exon	14918883	14919021	-
GWHAAZE00000002	exon	14918546	14918662	-
GWHAAZE00000002	exon	14918261	14918429	-
GWHAAZE00000002	exon	14912766	14912828	-
GWHAAZE00000002	exon	14911616	14912301	-
GWHAAZE00000002	CDS	14920397	14920439	-
GWHAAZE00000002	CDS	14920240	14920300	-
GWHAAZE00000002	CDS	14918883	14919021	-
GWHAAZE00000002	CDS	14918546	14918662	-
GWHAAZE00000002	CDS	14918261	14918429	-
GWHAAZE00000002	CDS	14912766	14912828	-
GWHAAZE00000002	CDS	14911616	14912301	-

Transcript Sequence
>GWHTAAZE005857 ATGAGTGCTTTTGGGTTTAGCAACTTTGGTCAGACGCAAGGTGCTGGTCAAAGCGGCTTTGGTGGCACTCCAAGCATTTTTGGTCAGAATAACTTCGGACAAGCGTCCGCCACTCCGAGCCCTGCGGTTGCACAACCAGCCCCCGTTACAAATCCTTTTGGGACACTACCTGCAATGCCTCAGATGTCCATTGGCCGTGCTGGAACTTCACCATCAGTTCAATATGGAATTTCCAGCTTGCCGGTTGTCGATAAACCTGCTCCTGTTAGGATATCATCCCTACTGACTTCTAGACACATTTCTCAAAGGCGGATCAGGTTGCCTGCAAGGAAATATTATCCAAAAAGTGATGGTCCAAAGGTGCCATTTTTTAGTGACGACGAAGATACCCCTAGCAATCCAAAGGCAGATGCACTTTTCATTCCCAGGGAGAATCCAAGAGCTCTGGTGATTCGCCCATTGGAGCAGTGGCCTGCAAGAACAAATGCATCTTCATCCAAGGATGCATCTACTCCAGCTTATGAAAATGGTAAAATCTCCGAAGCAGCTTCTATCCCTCCTTTAAATGGCTCCAGTGCAGGGGATGGACATAGAGATGTAGCCGAAAATGGCCACACTAAAGAAAGAGTTCAACATGTCAAACCAAACCAGAGACCTAATGGACTCCATGACGACCAGTCGACCCCAAAAGGTGACTCTTACATAACTCTGACGGGCCACAGAGCAGGTGAAGCGGCAATTGTTTACGAACATGGGGCCGACATAGAGGCTCTGATGCCTAAGCTCCGCCACTCCGACTACTACACAGAGCCTCGAATCCAAGAACTGGCAGCCAAAGAAAGGGCTGAACCGGGTTTTTGCCGCCATGTCAAGGACTTTGTGGTTGGTCGAAATGGGTTCGGAAGCATCAAGTTCCTCGGGGAGACTGACGTGAGAAGGCTCGATCTTGAATCTCTCATACAATTTAATCACCGGGAGGTGATTGTCTACATGGATGAGACCAAAAAACCTCCCATTGGACAAGGTCTGAACAAGCCCGCTGAGGTAACACTTCTCAATATAAAATGCTTTGATAAGAAGACGGGAAGTCACTACACGGAGGGACCTAGAATTGAAAAATACAAAGAGATGCTGAAGAAAAAGGCGGAGGACCAAGGGGCTGAGTTTGTGTCCTATGACCCGGTCAAAGGAGAGTGGAAGTTTAGGGTTAACCATTTCAGCGGGTACAGGCTCCGAGATGAAGATGAGTCGGATATGGATGCATCATCTTTAGAGTGA

Network for GWHGAAZE005849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04096.15	Nucleoporin2	265	411	8.40E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14297	NUP98, ADAR2, NUP116	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006913	biological_process	nucleocytoplasmic transport
GO:0005643	cellular_component	nuclear pore
GO:0017056	molecular_function	structural constituent of nuclear pore

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.418
	SRR3591706	second leaf	25.753
	SRR3591707	mature leaf	27.038
	SRR3591708	Shoot apex	41.380
	SRR3591709	Stem	46.069
	SRR3591710	White floral bud	46.399
	SRR3591711	White flower	56.952
	SRR3591712	Green floral bud	59.124
	SRR3591713	Yellow flower	42.221
SRP173429	SRR8316895	Juvenile bud stage	27.503
	SRR8316896	Juvenile bud stage	34.204
	SRR8316897	Juvenile bud stage	19.356
	SRR8316894	Third green stage	12.724
	SRR8316900	Third green stage	41.765
	SRR8316901	Third green stage	43.030
	SRR8316898	Complete white stage	12.402
	SRR8316899	Complete white stage	40.150
	SRR8316903	Complete white stage	29.236
	SRR8316902	Silver flowering stage	21.977
	SRR8316904	Silver flowering stage	25.768
	SRR8316905	Silver flowering stage	9.987
	SRR8316906	Gold flowering stage	37.642
	SRR8316907	Gold flowering stage	42.725
	SRR8316908	Gold flowering stage	47.918
SRP132670	SRR6706286	Control	45.215
	SRR6706287	Light intensity 50%	45.180
	SRR6706288	Light intensity 20%	44.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.545
	CNS0095593	Slightly white alabastrum(diploid) 2	43.287
	CNS0095594	Slightly white alabastrum(diploid) 3	43.250
	CNS0095595	Whole white alabastrum(diploid) 2	44.155
	CNS0095596	Whole white alabastrum(diploid) 3	48.321
	CNS0095597	Whole white alabastrum(diploid) 4	55.253
	CNS0095598	Silvery flower (diploied) 1	44.453
	CNS0095599	Silvery flower (diploied) 2	36.386
	CNS0095600	Silvery flower (diploied) 3	48.133
	CNS0095601	Golden flower (diploid) 1	39.037
	CNS0095602	Golden flower (diploid) 2	46.616
	CNS0095603	Golden flower (diploid) 3	46.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.664
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.274
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.997
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.994
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.431
	CNS0095610	Silvery flower (tetraploid) 1	51.395
	CNS0095611	Silvery flower (tetraploid) 2	45.029
	CNS0095612	Silvery flower (tetraploid) 3	44.243
	CNS0095613	Golden flower (tetraploid) 1	41.057
	CNS0095614	Golden flower (tetraploid) 2	45.485
	CNS0095615	Golden flower (tetraploid) 3	47.466
CRA001975	CRR073297	Stem 1	48.261
	CRR073298	Stem 2	42.077
	CRR073299	Stem 3	42.860
	CRR073300	Leaf 1	52.587
	CRR073301	Leaf 2	52.005
	CRR073302	Leaf 3	27.303
	CRR073303	Juvenile bud 1	44.855
	CRR073304	Juvenile bud 2	25.467
	CRR073305	Juvenile bud 3	59.232
	CRR073306	Third green 1	24.138
	CRR073307	Third green 2	20.086
	CRR073308	Third green 3	26.147
	CRR073309	Second white 1	24.175
	CRR073310	Second white 2	24.434
	CRR073311	Second white 3	26.649
	CRR073312	Silver flowering 1	29.526
	CRR073313	Silver flowering 2	28.382
	CRR073314	Silver flowering 3	28.589
	CRR073315	Gold flowering 1	24.096
	CRR073316	Gold flowering 2	34.723
	CRR073317	Gold flowering 3	25.150
	CRR073318	Tawny withering 1	44.365
	CRR073319	Tawny withering 2	46.231
	CRR073320	Tawny withering 3	45.122