Gene detail

Detail information of GWHGAAZE005856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGL39711.1	0	NAC transcription factor 055 [Jatropha curcas]
Swissprot	tr\|Q9FFI5\|NAC86_ARATH	3E-57	NAC domain-containing protein 86 {ECO:0000312\|EMBL:AED92405.1}
trEMBL	tr\|R4NEW2\|R4NEW2_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP25178.1}
TAIR10	AT1G33060.1	3E-108	NAC 014

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15002620	15010561	+
GWHAAZE00000002	mRNA	15002620	15010561	+
GWHAAZE00000002	exon	15002620	15002785	+
GWHAAZE00000002	exon	15003415	15003722	+
GWHAAZE00000002	exon	15006830	15007075	+
GWHAAZE00000002	exon	15007918	15008307	+
GWHAAZE00000002	exon	15008996	15009391	+
GWHAAZE00000002	exon	15010017	15010561	+
GWHAAZE00000002	CDS	15002620	15002785	+
GWHAAZE00000002	CDS	15003415	15003722	+
GWHAAZE00000002	CDS	15006830	15007075	+
GWHAAZE00000002	CDS	15007918	15008307	+
GWHAAZE00000002	CDS	15008996	15009391	+
GWHAAZE00000002	CDS	15010017	15010310	+
GWHAAZE00000002	three_prime_UTR	15010311	15010561	+

Transcript Sequence
>GWHTAAZE005864 ATGTCAGCTTTATCGATGGAATCATTACCTCTAGGTTTTAGATTCAGGCCGACCGACGAGGAACTCATCAATCACTATCTTCGCCTTAAAATCAGCTGCCGACATTCCGAGGTACAAGTTATACCTGAAATAGATGTCTGCAAGTGGGAGCCTTGGGATTTACCTGGGCTATCTGTAATAAAGACGGACGACCCGGAGTGGTTCTTTTTCTGTCCCCGAGATAGGAAGTATCCCAATGGGCATCGGTCCAATAGGGCGACAGATGCTGGCTATTGGAAGGCCACTGGTAAGGACAGGACAATAAAGTCCCGCAAGTCATCAAAGCCGGGTCATTATAATAATCCGCATATGATTGGCATGAAGAAGACTCTGGTCTTTTACCGAGGGCGAGCCCCCAAGGGTGAACGCACCAACTGGATCATGCATGAGTATCGTGCTACTGAAAAGGAACTTGATGGCACCCATGACGGGCAGGAACCCTATGTTCTGTGTCGTCTATTCCATAAGCCTGAAGAGAAGCCAGAGGTCTCGAAATACGATGAAGTTGAACAAACAGGCTTGTCTCCTACTACAACCAAATCTTCTCCTGATGACATTTCATCAGATCTCTTTCAAGAACCTTCTTCGGTGCTCGATGGAAATGTCCGAAAACAACCCGAAGGAATTACAAGATGGCTGACTGATAAGACTGACAAAATGATCCCTAATGCCCTTATACCTGTGTACCCGCCACTGAGGGAGGACTCGATATTTTACGAGCCAACATACGGCCAAATAGATTGCAAAGTCTTCTCCCCATTGCCATCACAGATTCAAACAGAGCTACGAGTATACATGGATTCACCTTTTGCTGATAATTTTGGCAATGATCACAATGGATTTCATTTTCAAGATGGCACCTGCGAACAAGATGCATCCCTTACGGAGTTGTTGGAAGTATTACAGAACCACGATGAACTCTCTTGCGAAGATTCCAACGGTCAGAAAAATTCCGGTTTTGGAAGTGAGAACCAAATGTGTGGGAACATTCACTGGTTTCCTCATGCTCTACCCGGAGACAAAGACCAGGGATTTTATAACGATGCCGACACTGATATGGGTCAAATGCAGATGCAAATGTCTCCCAAATCTTATAGAGGTCAAGCATCGATTTGCGACCCAGAACTCGGACCAGGCAACAACGTGGGTGCCATTTTTTGTAATTATATTGGAAAAGATTCTTCATCTAATTACATGGGTTCATTCAATAAACTGGAAGAATCAACCAGTCAGACGAATCCCAATGTTACACGTGGCAGTAATCTTGTCGCTGGACGTAAAATCAAGATTAGGGACCGCCAGCAGCCTCAAAAACAATCAAGCTCTGGAAATGTTGCGACACAAGGCACTGCCACTAGAAGAGTCCGTTTCCAGTCAAGGCTTGTGTCTGGGTCGTGTTGCTATGCCAAAGTGGGTGATTCTAATGGCTACAACGAAGAACAGGAAGCACAATCGGTTGTTACTGAGGGGAGTGAGGAAAAAAATGCAACAACTGAAGAAGATTCAGGGGCAAGTAAACTGGTCGAGTTTGATGAGGACGCAGAATCCAAATCCGTTGATAGCAATGAACCTAGTGAAGAGTCCAGCAAAGGAGGACTCAATTTGAGGATGAAACAGGGTGGCGGGACCTCCCAAACGGAATTGTCAGCATCATCAAAGGCACCCGTGGCTATCAATGGACTGTGTTTCTCGTCAGTTTATCTAGTTTGTTTACCTTTAATCGTAATTGTGTTTGTAATTTCTGTAGGAATATGGAAATGAAGAAAACTCTGAAGCTTATATATATATATAATATGTACGAGAATGCTTGTTTAGATGCTCTGTTCTTATTTATGTTTTAGATCTGGTAGAGAGCTCAGGAGTAGTTTGTATATTGTATGCTTACACTGCTATATTTATATTTGGGTAAGGGTCAATTTTAAATATTTTGGAAATTGCCTGTAATGTTATGTCCCTCTGCGTGGGAAAAAGATGACCAGACAATCAGATGGACAAGCTTTTTTCCAAGTTAA

Network for GWHGAAZE005856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	10	145	8.10E-38

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.262
	SRR3591706	second leaf	15.817
	SRR3591707	mature leaf	14.649
	SRR3591708	Shoot apex	23.938
	SRR3591709	Stem	25.649
	SRR3591710	White floral bud	31.316
	SRR3591711	White flower	40.498
	SRR3591712	Green floral bud	24.264
	SRR3591713	Yellow flower	27.535
SRP173429	SRR8316895	Juvenile bud stage	26.441
	SRR8316896	Juvenile bud stage	30.629
	SRR8316897	Juvenile bud stage	20.081
	SRR8316894	Third green stage	8.072
	SRR8316900	Third green stage	18.646
	SRR8316901	Third green stage	24.333
	SRR8316898	Complete white stage	11.854
	SRR8316899	Complete white stage	35.495
	SRR8316903	Complete white stage	16.010
	SRR8316902	Silver flowering stage	11.649
	SRR8316904	Silver flowering stage	13.540
	SRR8316905	Silver flowering stage	6.937
	SRR8316906	Gold flowering stage	21.358
	SRR8316907	Gold flowering stage	22.008
	SRR8316908	Gold flowering stage	20.464
SRP132670	SRR6706286	Control	30.725
	SRR6706287	Light intensity 50%	26.514
	SRR6706288	Light intensity 20%	26.488
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.633
	CNS0095593	Slightly white alabastrum(diploid) 2	40.173
	CNS0095594	Slightly white alabastrum(diploid) 3	38.903
	CNS0095595	Whole white alabastrum(diploid) 2	34.156
	CNS0095596	Whole white alabastrum(diploid) 3	18.476
	CNS0095597	Whole white alabastrum(diploid) 4	22.416
	CNS0095598	Silvery flower (diploied) 1	44.010
	CNS0095599	Silvery flower (diploied) 2	35.962
	CNS0095600	Silvery flower (diploied) 3	31.124
	CNS0095601	Golden flower (diploid) 1	32.273
	CNS0095602	Golden flower (diploid) 2	42.988
	CNS0095603	Golden flower (diploid) 3	41.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.484
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.775
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.314
	CNS0095610	Silvery flower (tetraploid) 1	28.318
	CNS0095611	Silvery flower (tetraploid) 2	25.372
	CNS0095612	Silvery flower (tetraploid) 3	26.547
	CNS0095613	Golden flower (tetraploid) 1	18.810
	CNS0095614	Golden flower (tetraploid) 2	24.512
	CNS0095615	Golden flower (tetraploid) 3	21.382
CRA001975	CRR073297	Stem 1	41.917
	CRR073298	Stem 2	41.188
	CRR073299	Stem 3	39.067
	CRR073300	Leaf 1	37.275
	CRR073301	Leaf 2	46.420
	CRR073302	Leaf 3	33.296
	CRR073303	Juvenile bud 1	41.988
	CRR073304	Juvenile bud 2	33.107
	CRR073305	Juvenile bud 3	46.995
	CRR073306	Third green 1	26.852
	CRR073307	Third green 2	25.275
	CRR073308	Third green 3	29.334
	CRR073309	Second white 1	24.663
	CRR073310	Second white 2	23.211
	CRR073311	Second white 3	21.418
	CRR073312	Silver flowering 1	21.665
	CRR073313	Silver flowering 2	27.040
	CRR073314	Silver flowering 3	23.792
	CRR073315	Gold flowering 1	28.267
	CRR073316	Gold flowering 2	32.174
	CRR073317	Gold flowering 3	25.893
	CRR073318	Tawny withering 1	32.447
	CRR073319	Tawny withering 2	34.199
	CRR073320	Tawny withering 3	26.518