Detail information of GWHGAAZE005858


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011081336.12.9157E-138PREDICTED: B3 domain-containing transcription factor NGA1-like [Sesamum indicum]
Swissprottr|Q8LMR9|Y3209_ORYSJ2E-79B3 domain-containing protein Os03g0120900
trEMBLtr|A0A061G9U8|A0A061G9U8_THECC2E-121AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOY23814.1}
TAIR10AT2G46870.11E-59AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1508683815088142-
GWHAAZE00000002mRNA1508683815088142-
GWHAAZE00000002exon1508683815088142-
GWHAAZE00000002CDS1508683815088142-
Transcript Sequence

Network for GWHGAAZE005858

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B31182227.00E-29
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005858.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550556065Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.333
SRR3591706second leaf8.876
SRR3591707mature leaf10.808
SRR3591708Shoot apex8.060
SRR3591709Stem1.832
SRR3591710White floral bud22.059
SRR3591711White flower17.525
SRR3591712Green floral bud26.159
SRR3591713Yellow flower13.599
SRP173429 SRR8316895Juvenile bud stage 10.694
SRR8316896Juvenile bud stage 12.381
SRR8316897Juvenile bud stage 5.950
SRR8316894Third green stage 5.824
SRR8316900Third green stage 13.416
SRR8316901Third green stage 17.153
SRR8316898Complete white stage 4.016
SRR8316899Complete white stage 8.401
SRR8316903Complete white stage 4.715
SRR8316902Silver flowering stage4.680
SRR8316904Silver flowering stage9.785
SRR8316905Silver flowering stage3.251
SRR8316906Gold flowering stage 20.306
SRR8316907Gold flowering stage 13.000
SRR8316908Gold flowering stage 14.667
SRP132670SRR6706286Control23.831
SRR6706287Light intensity 50%23.749
SRR6706288Light intensity 20%24.576
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.674
CNS0095593Slightly white alabastrum(diploid) 28.894
CNS0095594Slightly white alabastrum(diploid) 314.699
CNS0095595Whole white alabastrum(diploid) 27.690
CNS0095596Whole white alabastrum(diploid) 313.488
CNS0095597Whole white alabastrum(diploid) 48.353
CNS0095598Silvery flower (diploied) 15.309
CNS0095599Silvery flower (diploied) 25.767
CNS0095600Silvery flower (diploied) 37.573
CNS0095601Golden flower (diploid) 17.777
CNS0095602Golden flower (diploid) 26.533
CNS0095603Golden flower (diploid) 37.667
CNS0095604Slightly white alabastrum(tetraploid) 16.305
CNS0095605Slightly white alabastrum(tetraploid) 24.927
CNS0095606Slightly white alabastrum(tetraploid) 36.528
CNS0095607Whole white alabastrum(tetraploid) 12.966
CNS0095608Whole white alabastrum(tetraploid) 22.953
CNS0095609Whole white alabastrum(tetraploid) 316.783
CNS0095610Silvery flower (tetraploid) 120.323
CNS0095611Silvery flower (tetraploid) 214.169
CNS0095612Silvery flower (tetraploid) 317.026
CNS0095613Golden flower (tetraploid) 14.655
CNS0095614Golden flower (tetraploid) 230.448
CNS0095615Golden flower (tetraploid) 318.410
CRA001975CRR073297Stem 135.313
CRR073298Stem 230.000
CRR073299Stem 330.621
CRR073300Leaf 133.160
CRR073301Leaf 232.041
CRR073302Leaf 331.064
CRR073303Juvenile bud 114.277
CRR073304Juvenile bud 261.364
CRR073305Juvenile bud 319.021
CRR073306Third green 128.988
CRR073307Third green 230.152
CRR073308Third green 345.756
CRR073309Second white 16.603
CRR073310Second white 216.427
CRR073311Second white 311.933
CRR073312Silver flowering 110.959
CRR073313Silver flowering 211.455
CRR073314Silver flowering 37.762
CRR073315Gold flowering 112.645
CRR073316Gold flowering 223.060
CRR073317Gold flowering 317.310
CRR073318Tawny withering 19.336
CRR073319Tawny withering 222.204
CRR073320Tawny withering 34.701