Gene detail

Detail information of GWHGAAZE005879

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI34600.3	8.2627E-146	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q84WP6\|NAC43_ARATH	4E-107	NAC domain-containing protein 43
trEMBL	tr\|G4V2G0\|G4V2G0_GOSHI	7E-143	NAC trascription factor 1 {ECO:0000313\|EMBL:ADN39414.1}
TAIR10	AT2G46770.1	1E-79	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15516274	15518238	+
GWHAAZE00000002	mRNA	15516274	15518238	+
GWHAAZE00000002	exon	15516274	15516408	+
GWHAAZE00000002	exon	15516561	15516836	+
GWHAAZE00000002	exon	15517588	15518238	+
GWHAAZE00000002	CDS	15516274	15516408	+
GWHAAZE00000002	CDS	15516561	15516836	+
GWHAAZE00000002	CDS	15517588	15518238	+

Transcript Sequence
>GWHTAAZE005887 ATGTCAGAAGACATGAATCTGTCAGTAAATGGCCAATCTCAAGTCCCCCCGGGATTCCGTTTCCATCCGACTGAAGAAGAGCTCCTTCACTACTACTTGAGGAAGAAAGTTGCCTTTGAGAAAATAGATCTCGATAGGTGTAGAATAGGATCTACACCGCAAAATGATTGGTACTTTTTCAGTCACAAGGACAAGAAGTACCCAACAGGGACGAGAACTAATCGTGCCACTGCTGCTGGATTTTGGAAGGCAACTGGTCGGGACAAGGTGATATATAGCAGCTCGAGAAGGATTGGGATGAGGAAGACTTTGGTTTTCTACAAAGGACGTGCTCCTCATGGACAGAAATCTGATTGGATTATGCATGAATATAGGCTTGACGACAACTCTTCTACTCATGTCGACAATACTGCCTCTAACTTAGTAGGAGACTCGATGACTGAAGAAGGTTGGGTCGTATGCCGGGTTTTCAAGAAGAAAAATTACCACAAAGCCCTCGAGAGTCCCCAAACCTCATCAACCTCAATGGAGCACCACCCAAGGAACCCACTCCTCCACAACCACACCAAACCGGGGGGCGTTTTAGACCAAATACTCCACTACATGGGCCGTTCTTGCAAACAGGAACTTGAACCGAACGCGACCTATCCAATCACTTCTACCTTCGGTGACGAAATCCAAACCCGGTTTATGCAACTCCCAAGGCTCGAGAGCCCCACCATGCCATCATCCTTCTACCACGCCCAATCAATGGACGAGATCTTTACTGAAAATAACATAGTCAATGAGCCCAAAAATGGGCTTACCGATTGGGTGACCTACGACCGACTAGTGGCATCTCAGCTAAATGGCCAAGTGGAGACGGTTAATGACCCGAACGATGATTTTTGTTTCTCTATCGACAATCACGAGGAAAATCCACAAATGCCACAACAACATTTTGACAAATCGAATCATATTAATGCGTCTCAAGTTTATAGTGGCGATATGGATCTGTGGAGCTACGCGCAATCATCGTCGCCATCATCGTCGTCTGACCCATTATGCCATTTGTCGGTATAG

Network for GWHGAAZE005879

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	16	126	3.50E-29

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.423
	SRR3591706	second leaf	1.069
	SRR3591707	mature leaf	0.530
	SRR3591708	Shoot apex	3.355
	SRR3591709	Stem	132.514
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.122
	SRR3591712	Green floral bud	1.132
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	50.332
	SRR8316896	Juvenile bud stage	27.135
	SRR8316897	Juvenile bud stage	6.084
	SRR8316894	Third green stage	1.997
	SRR8316900	Third green stage	1.306
	SRR8316901	Third green stage	1.652
	SRR8316898	Complete white stage	0.664
	SRR8316899	Complete white stage	6.138
	SRR8316903	Complete white stage	1.445
	SRR8316902	Silver flowering stage	0.044
	SRR8316904	Silver flowering stage	0.070
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.223
	SRR8316908	Gold flowering stage	0.008
SRP132670	SRR6706286	Control	1.799
	SRR6706287	Light intensity 50%	1.158
	SRR6706288	Light intensity 20%	1.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.531
	CNS0095593	Slightly white alabastrum(diploid) 2	0.586
	CNS0095594	Slightly white alabastrum(diploid) 3	8.989
	CNS0095595	Whole white alabastrum(diploid) 2	0.351
	CNS0095596	Whole white alabastrum(diploid) 3	1.081
	CNS0095597	Whole white alabastrum(diploid) 4	0.230
	CNS0095598	Silvery flower (diploied) 1	1.540
	CNS0095599	Silvery flower (diploied) 2	0.390
	CNS0095600	Silvery flower (diploied) 3	0.682
	CNS0095601	Golden flower (diploid) 1	0.580
	CNS0095602	Golden flower (diploid) 2	0.916
	CNS0095603	Golden flower (diploid) 3	0.615
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.932
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.949
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.521
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.273
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.126
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.851
	CNS0095610	Silvery flower (tetraploid) 1	0.293
	CNS0095611	Silvery flower (tetraploid) 2	0.328
	CNS0095612	Silvery flower (tetraploid) 3	0.010
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.273
	CNS0095615	Golden flower (tetraploid) 3	0.159
CRA001975	CRR073297	Stem 1	159.820
	CRR073298	Stem 2	70.727
	CRR073299	Stem 3	90.752
	CRR073300	Leaf 1	0.448
	CRR073301	Leaf 2	0.299
	CRR073302	Leaf 3	0.739
	CRR073303	Juvenile bud 1	0.161
	CRR073304	Juvenile bud 2	0.303
	CRR073305	Juvenile bud 3	0.572
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.075
	CRR073308	Third green 3	0.131
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.016
	CRR073315	Gold flowering 1	0.249
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.244
	CRR073318	Tawny withering 1	42.974
	CRR073319	Tawny withering 2	24.020
	CRR073320	Tawny withering 3	71.634