Gene detail

Detail information of GWHGAAZE005880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272535.3	2.54157E-90	PREDICTED: growth-regulating factor 8 [Vitis vinifera]
Swissprot	tr\|Q9SU44\|GRF8_ARATH	2E-44	Growth-regulating factor 8
trEMBL	tr\|B9RYV2\|B9RYV2_RICCO	3E-78	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF43454.1}
TAIR10	AT4G24150.1	5E-39	growth-regulating factor 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15552988	15555349	-
GWHAAZE00000002	mRNA	15552988	15555349	-
GWHAAZE00000002	exon	15555058	15555349	-
GWHAAZE00000002	exon	15554820	15554960	-
GWHAAZE00000002	exon	15554326	15554659	-
GWHAAZE00000002	exon	15552988	15553531	-
GWHAAZE00000002	CDS	15555058	15555349	-
GWHAAZE00000002	CDS	15554820	15554960	-
GWHAAZE00000002	CDS	15554326	15554659	-
GWHAAZE00000002	CDS	15552988	15553531	-

Transcript Sequence
>GWHTAAZE005888 ATGGGAAATGGATCAAATAGGAGTGGTGATGGGCTTGAAGAAGGTTCATCTTTATCTTTAGACTGTGATGTTGGGTTGGGTTTAAAGATGCAAAACACTGAATCATACCCTCATCTTCCTTATCATCATCCTGATCCTCATACTACTACTAGTAGTGGCTTTAACGGCAGTTATGGTGGCCGCGGTGGGCCCGTTTCTTTCGGTACATACGATGATGCTGTCGGAGCTGCAGGCTCAGTATTGCAAAGGACTTTGCATCCTTTTACCTCTGATACTTCTTTCAAATCCTCAGGGAAAATCCTTTTTACAACGTCTCAGTGGCAAGAGCTTGAAAGACAGACCATGATCTACAAGTACATGATGGCTTCCGTCCCTGTTCCTCCTCAACTCCTCTTACCCTTCACTAAAACCCCATCTCTCTCTCAATCTAACAGGGTTTTGGATTTGAGGTTTTCAAGCGGGTCGGATCCGGAACCGTGGAGGTGTAGGAGGACTGATGGGAAGAAATGGCGGTGCTCAAGGGATGTGGCGCCCGAACAGAAGTACTGCGAGAGGCATGCCCACAAAACCCGAACTCGTTCAAGAAAGCCTGTGGAAAATCAAACCCAGAATACTACTACTAGCACCACCAAGACATTCAACAATCACAGTCACCAACCTAATATTCTTCCAGCTTATTCTACTACTACTACCACCGACCCTTTTCAGAAGCCTATTTCTCACTTCCAAACCCTACCCTCGTCTGCTACGTCTTTTGACCAAGCCAGGTGCATTGAGTGGTTCATGAAAGGTGGCACCAGCATCCTCCCTCTATCCTCCACATCAAACCAACAACAATGGCCTTCTTCAAGAATAGGATTCAAAAGAGACATCACAGACCACACCAAAAATCCCCCTCTCTTTCCTCAATACGAGGAAGAACCACAAACACCCAACAACTTCAATTCCTACAGGTTCGAGTCTCACCAGCTGATAGACTGCTCGTTACTCAACCCCAATCCTCATGACACTCCCCACACAACGAGGCGCTTCATTGACGCTTGGTCAACCCAAGAAAGGGAGGATTTGAATTCTGTTGGGAACAAATGTTCTGTTTCGTCATCGGCTAGAAAGTTGCCGCTCTCCTCCCTGACACTCTCGATGTCTGGCGCAGATGGGATTGATGAGGACAATACAAGCACGCAATTGAGTGCTGTTGAGATGGAAGAGGAACGGGGGTTGTTGAAGTCACACTGGCTGAACCCGGCTATGTGGATGGGTTCACCGCCACCCGGTGGGCCACTAGGGGAGGCTTTGTGCCTAGGGGTGGCT

Network for GWHGAAZE005880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	102	133	2.00E-13
PF08879.11	WRC	157	199	1.20E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.098
	SRR3591706	second leaf	1.821
	SRR3591707	mature leaf	0.063
	SRR3591708	Shoot apex	48.798
	SRR3591709	Stem	0.170
	SRR3591710	White floral bud	2.481
	SRR3591711	White flower	3.766
	SRR3591712	Green floral bud	0.304
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.132
	SRR8316896	Juvenile bud stage	22.381
	SRR8316897	Juvenile bud stage	0.782
	SRR8316894	Third green stage	0.716
	SRR8316900	Third green stage	0.072
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.307
	SRR8316903	Complete white stage	0.895
	SRR8316902	Silver flowering stage	0.052
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.768
	SRR6706287	Light intensity 50%	0.548
	SRR6706288	Light intensity 20%	0.382
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.742
	CNS0095593	Slightly white alabastrum(diploid) 2	1.955
	CNS0095594	Slightly white alabastrum(diploid) 3	1.467
	CNS0095595	Whole white alabastrum(diploid) 2	1.078
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.163
	CNS0095598	Silvery flower (diploied) 1	11.339
	CNS0095599	Silvery flower (diploied) 2	18.103
	CNS0095600	Silvery flower (diploied) 3	5.616
	CNS0095601	Golden flower (diploid) 1	82.090
	CNS0095602	Golden flower (diploid) 2	16.666
	CNS0095603	Golden flower (diploid) 3	16.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.948
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	4.191
	CNS0095612	Silvery flower (tetraploid) 3	0.910
	CNS0095613	Golden flower (tetraploid) 1	0.140
	CNS0095614	Golden flower (tetraploid) 2	0.394
	CNS0095615	Golden flower (tetraploid) 3	0.127
CRA001975	CRR073297	Stem 1	7.528
	CRR073298	Stem 2	4.877
	CRR073299	Stem 3	6.628
	CRR073300	Leaf 1	0.328
	CRR073301	Leaf 2	0.306
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.015
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.157
	CRR073306	Third green 1	0.032
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.262
	CRR073316	Gold flowering 2	0.179
	CRR073317	Gold flowering 3	0.117
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.244
	CRR073320	Tawny withering 3	0.095