Gene detail

Detail information of GWHGAAZE005885

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007210981.1	3.4803E-175	hypothetical protein PRUPE_ppa021506mg [Prunus persica]
Swissprot	tr\|Q9FJ25\|GDL81_ARATH	1E-155	GDSL esterase/lipase At5g41890
trEMBL	tr\|M5WZD0\|M5WZD0_PRUPE	1E-175	Uncharacterized protein {ECO:0000313\|EMBL:EMJ12180.1}
TAIR10	AT5G41890.1	4E-125	GDSL-like Lipase/Acylhydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15619789	15622109	-
GWHAAZE00000002	mRNA	15619789	15622109	-
GWHAAZE00000002	exon	15621857	15622109	-
GWHAAZE00000002	exon	15621190	15621320	-
GWHAAZE00000002	exon	15620911	15621095	-
GWHAAZE00000002	exon	15620769	15620803	-
GWHAAZE00000002	exon	15620101	15620358	-
GWHAAZE00000002	exon	15619789	15620021	-
GWHAAZE00000002	CDS	15621857	15622109	-
GWHAAZE00000002	CDS	15621190	15621320	-
GWHAAZE00000002	CDS	15620911	15621095	-
GWHAAZE00000002	CDS	15620769	15620803	-
GWHAAZE00000002	CDS	15620101	15620358	-
GWHAAZE00000002	CDS	15619789	15620021	-

Transcript Sequence
>GWHTAAZE005893 ATGGAAATCTGTAAAATTTCACTAAAATTGCTTTTGTTAAGGCTTGTATTCATATTGATGCAAGTTTTGGGGTGCTTTTGTAATAATTTAACAACATTTGTATTTGGAGACTCATTGGTTGATGCAGGAAACAATGACTTCTTGTTCACACTCTCAAAGGCGGACTCTCCGCCTTATGGCATCGACTTTCAACCCTCTGGTGGTTTGCCCACCGGTAGATTCACCAACGGTCGCACCATTTCGGATATTGTAGATCAAGCACTTGGAGCAGTCTCATTTCCTCCTCCTTACTTGGCTCCTAACGCATCATCAAATGCAATCCTTGGTGGCATAAATTATGCTTCTGGCGCTTCTGGAATTTTGGATCAAACCGGAACTTTCTTTATCGGAAGGGTCCCACTAAGAGAGCAAATAAACTATTTTGAGCAGAGTAGAAGTTACATGGTTAATGTTATGGGAGAGAATGGAACAATGGAGTTCTTAAAGAAGGCACTCTTCTCTTTAACAGTTGGCTCCAATGATGTTCTCAACTATTTCCAACCCCCATTCCCTTTCTTGGTGAAGACAAGCAATTATGATTTTGCCAGTGTCATAGCCGTGAGACCGACTCCACGAGTTGGGGCACGAAAGTTCATTGTAGTAGGAATTGGACCACTTGGATGCATACCCTTTGTACGTGCCCTCCACTTAGTACCAGCTGGAAAATGCTCTGTTACAGTAAATACGCTAATCCGAGGCTACAACCAAAGGCTAGTGAAGGTGTTAGATGCGCTAAACCAAGAGACAGGACTGGACACTGTCTTTGTTTATGCAAATTCATACGACGTTGTAAGGGACATCATTCTAAATTATCATAAATACGGATTCGAGAATGCCAAAGATCCATGTTGTGGAGGATATTTTCCGCCATTTGTATGCTTTAATGGGAAAAATGTGAATGGAAGTTCGGTTTTGTGTGAAGATAGAGGCAAGTATGTATTTTGGGATGCTTATCATCCCACAGAAGCTGCAAATTTAATTATAGCAGAGAAGTTATTGAATGGTGATCAAACTGTTAGCTCTCCTATTAACATTCGGGAGCTTTACAAACTTTAA

Network for GWHGAAZE005885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0055

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00657.23	Lipase_GDSL	33	345	3.30E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.858
	SRR3591706	second leaf	0.583
	SRR3591707	mature leaf	0.095
	SRR3591708	Shoot apex	0.253
	SRR3591709	Stem	1.633
	SRR3591710	White floral bud	0.313
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.078
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.471
	SRR8316896	Juvenile bud stage	2.258
	SRR8316897	Juvenile bud stage	0.100
	SRR8316894	Third green stage	0.376
	SRR8316900	Third green stage	1.090
	SRR8316901	Third green stage	1.732
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.069
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.466
	SRR8316904	Silver flowering stage	0.170
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.092
SRP132670	SRR6706286	Control	0.424
	SRR6706287	Light intensity 50%	0.204
	SRR6706288	Light intensity 20%	0.288
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.481
	CNS0095593	Slightly white alabastrum(diploid) 2	2.445
	CNS0095594	Slightly white alabastrum(diploid) 3	2.529
	CNS0095595	Whole white alabastrum(diploid) 2	2.000
	CNS0095596	Whole white alabastrum(diploid) 3	1.078
	CNS0095597	Whole white alabastrum(diploid) 4	0.912
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.015
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.493
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.496
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.458
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.231
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.035
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.347
	CRR073298	Stem 2	0.127
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.665
	CRR073301	Leaf 2	0.843
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.302
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000